BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0011.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-... 625 e-180 gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [H... 83 4e-17 gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-... 60 2e-10 >gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 306 Score = 625 bits (1612), Expect = e-180, Method: Compositional matrix adjust. Identities = 304/306 (99%), Positives = 304/306 (99%) Query: 1 MSTPLYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEER 60 MSTPLYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEER Sbjct: 1 MSTPLYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEER 60 Query: 61 VQVQNTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEK 120 VQVQNTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEK Sbjct: 61 VQVQNTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEK 120 Query: 121 QIYEFYKHVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRD 180 QIYEFYKHVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRD Sbjct: 121 QIYEFYKHVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRD 180 Query: 181 LIELGGDAVVGPWDGEEAITLIPDLDAGATGAMTGGGYPDGIRKIVDAYFAGDTEKAAEL 240 LIELGGDAVVGPWDGEEAITLIPDLDAGATGAMTGGGYPDGIRKIVDAYFAGD EKAAEL Sbjct: 181 LIELGGDAVVGPWDGEEAITLIPDLDAGATGAMTGGGYPDGIRKIVDAYFAGDIEKAAEL 240 Query: 241 YMQWLPLINYENRQCGLFACKALMLEGGVIKSDMLRHPQPPLHPKVREGLLRVARRLDPL 300 YMQWLPLINYENRQCGL ACKALMLEGGVIKSDMLRHPQPPLHPKVREGLLRVARRLDPL Sbjct: 241 YMQWLPLINYENRQCGLSACKALMLEGGVIKSDMLRHPQPPLHPKVREGLLRVARRLDPL 300 Query: 301 VLSWGR 306 VLSWGR Sbjct: 301 VLSWGR 306 >gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [Herbaspirillum seropedicae SmR1] Length = 292 Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 13/292 (4%) Query: 5 LYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEERVQVQ 64 + +G T +G LD +G ++ ID+ I G++ + I+ E +S EE ++ Sbjct: 1 MIKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI 60 Query: 65 NTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEKQIYE 124 +EH A R+P+I T + E + A+ GA + + PY+ R ++ +Y Sbjct: 61 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYN---RPTQEGMYL 117 Query: 125 FYKHVSDAIDIPIMIQDAPVAGTP-LSAPFLARMAKEIEQVSYFKIETAGAASKLRDLIE 183 +K +++++D+P+++ + P +S + R+A +++ + K + G ++ DLI Sbjct: 118 HFKKIAESVDLPVILYNVPGRTVADMSNETILRLA-QVKGIVGVK-DATGNIARGTDLIR 175 Query: 184 LGGDAVVGPWDGEEAITLIPDLDAGATG-AMTGGGYPDGIRKIVDAYFAGDTEKAAELYM 242 L + + G++A + L GA ++T P + ++ A +G+ +A EL Sbjct: 176 LAPKS-FAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNN 234 Query: 243 QWLPLINYENRQCGLFACKALMLEGGVIKSDMLRHPQPPL----HPKVREGL 290 + LPL N + K M E G+I S M R P PL H VR L Sbjct: 235 KLLPLHNKLFVEPNPVPLKWAMQEMGLIPSGM-RLPLAPLGAAYHDTVRAAL 285 >gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 305 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 28/295 (9%) Query: 7 RGVFPVAPTIFDANGKLDLEGQKRAIDFMID-AGSNGLCILANFSEQFVLSDEERVQVQN 65 RG+ P T F +G +D R ++ G GL +L + E LS E+ V Sbjct: 6 RGLVPAPVTPFTRDGAVDHAAIMRLGKWLGSFDGVKGLVVLGHAGEGTFLSQSEQAAVIE 65 Query: 66 TVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEKQIYEF 125 + ++ GRVPVI T G+Q+ AE ++ A AGAA +V P + F + + Sbjct: 66 SFVKSTDGRVPVIAGITLEGTQVAAEEAKRAVKAGAAAGLVYPSHGWLRFGYQKGAPQDR 125 Query: 126 YKHVSDAIDIPIMIQDAPVAGTPL----------SAPFLARMAKEIEQVSYFKIETAGAA 175 Y+ + + +P+++ P A + P + M + + + E Sbjct: 126 YRAIYEESGLPLILFQYPDATKATYNLETQLDIAALPGVFAMKNGVRNMRRWDTEIPVVR 185 Query: 176 SKLRDLIELGGDAVVGPWDGEEAITLIPDLDAGATGAMTGGGY--PDGIRKIVDAYFAGD 233 + DL L E + + D+D GA+ G G P+ + ++ A A D Sbjct: 186 RERPDLQIL-------TCHDEYLLHTMFDVD----GALVGYGSIAPELLIDLIAAGKAKD 234 Query: 234 TEKAAELYMQWLPLI-NYENRQC---GLFACKALMLEGGVIKSDMLRHPQPPLHP 284 KA ++ + LP+ N +R G A K ++ G+++ +R P PL P Sbjct: 235 YRKARAIHDKLLPVTKNVYHRGSHMEGTVALKHALVARGILEHATVRSPLLPLEP 289 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 951,895 Number of extensions: 37529 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 3 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)