BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0010.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310699|ref|YP_003774791.1| two component response regulato...   374   e-105
gi|300311469|ref|YP_003775561.1| oxidative stress resistance two...    68   5e-13

>gi|300310699|ref|YP_003774791.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF 60
           MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF
Sbjct: 41  MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF 100

Query: 61  CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN 120
           CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN
Sbjct: 101 CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN 160

Query: 121 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP 180
           SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP
Sbjct: 161 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP 220

Query: 181 IQAR 184
           IQAR
Sbjct: 221 IQAR 224


>gi|300311469|ref|YP_003775561.1| oxidative stress resistance two
           component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 253

 Score = 67.8 bits (164), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 8   DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67
           D+ ++D+         + RRLR    +  I+++ A  E +  RI+GL  GAD   P P  
Sbjct: 63  DLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDV-DRIIGLEMGADDYLPKPFN 121

Query: 68  LDILMTYINVILRRLVP----------------GVWQLDLKARTLRTPSNDALKVNEKEM 111
              L+  IN +LRR  P                G + LDL  RTL+  + D + +   E 
Sbjct: 122 PRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKK-NGDTISLTTGEF 180

Query: 112 ALLRLLAANSHHLASRSDIAGVF-GKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTL 170
           ++L++ A N+    SR  +  +  G+ Y  FD R L+  +SRLR+       + L +QT+
Sbjct: 181 SVLKVFARNARQPLSREKLMEMARGREYEVFD-RSLDVQISRLRKLIEPDPANPLYIQTV 239

Query: 171 HGEGYYF 177
            G GY F
Sbjct: 240 WGLGYVF 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 579,545
Number of extensions: 22200
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 6
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)