BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0008.p (922 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 1822 0.0 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 187 4e-48 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 131 2e-31 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 127 5e-30 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 121 3e-28 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 1822 bits (4720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 909/916 (99%), Positives = 913/916 (99%) Query: 7 LRRAHGRALRMMRALLLTLALGLVHAPRAGALSIDFAQVGEAATITSALWLLHDPGAHLG 66 +RRAHG ALRMMRALLLTLALGLVHAPRAGALSIDFAQVGEAATITSALWLLHDPGAHLG Sbjct: 1 MRRAHGPALRMMRALLLTLALGLVHAPRAGALSIDFAQVGEAATITSALWLLHDPGAHLG 60 Query: 67 VQEARAQPDWRPVGVSVLKLGYDEGAYWLYGTLRNAAEVPVTRWLGLGSARLEDVQLHLL 126 VQEARAQPDWRPVGVSVLKLGYDEGAYWLYGTLRNAAEVPVTRWLGLGSARLEDVQLHLL Sbjct: 61 VQEARAQPDWRPVGVSVLKLGYDEGAYWLYGTLRNAAEVPVTRWLGLGSARLEDVQLHLL 120 Query: 127 DTDHGGDASAPAQMQQAGTRFPLGQRSVRSLRPFFTVTLAPGEERQFMLRVASDSIIDIS 186 DTDHGGDASAPAQMQQAGTRFPLGQRSVRSLRPFFTVTLAPGEERQFMLRVASDSIIDIS Sbjct: 121 DTDHGGDASAPAQMQQAGTRFPLGQRSVRSLRPFFTVTLAPGEERQFMLRVASDSIIDIS 180 Query: 187 VALWEPAAMRQEEGRELAIQGFLLGLSLLLAAYALVQGLVWRDRSLMLMAAWLVTAQAYI 246 VALWEPAAMRQEEGRELAIQGFLLGLSLLLAAYALVQGLVWRDRSLMLMAAWLVTAQAYI Sbjct: 181 VALWEPAAMRQEEGRELAIQGFLLGLSLLLAAYALVQGLVWRDRSLMLMAAWLVTAQAYI 240 Query: 247 CAFQGYLYRYLLEAGSPWIVHAPATLGCLATLIYLRMSQSLVELERLWRWKTLYRCMILA 306 CAFQGYLYRYLLEAGSPWIVHAPATLGCLATLIYLRMSQSLVELE+LWRWKTLYRCMILA Sbjct: 241 CAFQGYLYRYLLEAGSPWIVHAPATLGCLATLIYLRMSQSLVELEQLWRWKTLYRCMILA 300 Query: 307 LGAVTLWTALGDYRDAAPVANASAGLSYLAWLASMLHAWRRRLDNARMLVLSFALAWLAM 366 LG VTLWTALGDYRDAAPVANASAGLSYLAWLASMLHAWRRRLDNARMLVLSFALAWLAM Sbjct: 301 LGGVTLWTALGDYRDAAPVANASAGLSYLAWLASMLHAWRRRLDNARMLVLSFALAWLAM 360 Query: 367 SMKMLELNGVFDGDLLPDWRFAALFQIGLLCMTSVIVTGRAVDLHRKHEQMQWTMLYLRV 426 SMKMLELNGVFDGDLLPDWRFAALFQIGLLCMTSVIVTGRAVDLHRKHEQMQWTMLYLRV Sbjct: 361 SMKMLELNGVFDGDLLPDWRFAALFQIGLLCMTSVIVTGRAVDLHRKHEQMQWTMLYLRV 420 Query: 427 REQLKLEKAVAARTQELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASG 486 REQLKLEKAVAARTQELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASG Sbjct: 421 REQLKLEKAVAARTQELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASG 480 Query: 487 GPHAGHGRIIMRSARHMLTMVNDLIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQR 546 GPHAGHGRIIMRSARHMLTMVNDLIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQR Sbjct: 481 GPHAGHGRIIMRSARHMLTMVNDLIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQR 540 Query: 547 QHNHFTLDISPDLPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKG 606 QHNHFTLDISPDLPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKG Sbjct: 541 QHNHFTLDISPDLPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKG 600 Query: 607 ALQIEVSDTGCGIAPQFQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSIVLESQ 666 ALQIEVSDTGCGIAPQFQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSIVLESQ Sbjct: 601 ALQIEVSDTGCGIAPQFQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSIVLESQ 660 Query: 667 PGMGTRMHLQLPAERGSEQDIASHHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQL 726 PGMGTRMHLQLPAERGSEQDIASHHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQL Sbjct: 661 PGMGTRMHLQLPAERGSEQDIASHHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQL 720 Query: 727 SSLGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAARRLLPEVPV 786 SSLGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAARRLLPEVPV Sbjct: 721 SSLGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAARRLLPEVPV 780 Query: 787 LLLSATLHACELELDGDLRFDGSLLKPVNFSELQEMIARLLQLPLLGSTASSASSGGSVG 846 LLLSATLHACE+ELDGDLRFDGSLLKPVNFSELQEMIA+LLQLPLLGSTASSASSGGSVG Sbjct: 781 LLLSATLHACEVELDGDLRFDGSLLKPVNFSELQEMIAQLLQLPLLGSTASSASSGGSVG 840 Query: 847 EVVAMPPEALLQAALAMIADGAVSDLIDWCETLGHEHPQCSQFQAQALEQISQGHLARLR 906 EVVAMPPEALLQAALAMIADGAVSDLIDWCETLGHEHPQCSQFQAQALEQISQGHLARLR Sbjct: 841 EVVAMPPEALLQAALAMIADGAVSDLIDWCETLGHEHPQCSQFQAQALEQISQGHLARLR 900 Query: 907 AMCEQALSERTASATI 922 AMCEQALSERTASA I Sbjct: 901 AMCEQALSERTASAAI 916 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 143/402 (35%), Positives = 214/402 (53%), Gaps = 37/402 (9%) Query: 442 ELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASGG-PHAGHGRI--IMR 498 EL++A +AA+ ANLAKS F+ +SH+LRTPL SILG+A ++ P A I I R Sbjct: 673 ELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIRR 732 Query: 499 SARHMLTMVNDLIDYARGDPLDTPQPT-PLYLHALLQEIAQEGQVLAQRQHNHFTLDISP 557 S H+L++++ L+D A+ + + L L A L++I A+++ HF D S Sbjct: 733 SGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSG 792 Query: 558 DLPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGC 617 LP ++ D +RL +IL NLL NA K+T G + L +++ + A +V DTG Sbjct: 793 RLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIA-------YFDVIDTGI 845 Query: 618 GIAPQFQSRIFEPFERADAD--RRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHL 675 GIA + RIF PFER+ A R G G+GLAI R+ V MGG + ++SQ G G+ HL Sbjct: 846 GIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHL 905 Query: 676 QL-------PAERGSEQDIASHHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQLSS 728 ++ P R +D S + G R ++VV+D RLL D L Sbjct: 906 KIYLPEVHVPRPRIKLEDQMSGYA-----------GPSRHILVVDDQASQRRLLKDMLMP 954 Query: 729 LGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAAR-RLLPEVPVL 787 LGF VS + ++ +A + T+ P LVL D +P + G +V +A R R L ++P+L Sbjct: 955 LGFTVS---EADSGLACME--TLGHALPDLVLLDIAMPQMDGWSVARAIRARGLAQLPIL 1009 Query: 788 LLSATLHACELELDGDLRFDGSLLKPVNFSELQEMIARLLQL 829 L+SA E + + ++KPV++ EL I + LQL Sbjct: 1010 LVSANAFENLHERNEPPLVNDFVVKPVSYHELLGKIRQHLQL 1051 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 206/471 (43%), Gaps = 70/471 (14%) Query: 410 LHRKHEQMQWTMLYLRVREQL-KLEKAVAARTQE-LRQALQAADEANLAKSGFLTRISHD 467 L + +++ T L + QL +L+K A+TQ L + + AN KS FL +SH+ Sbjct: 426 LETQQAELEETNAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHE 485 Query: 468 LRTPLTSILGFADMIQAS-----GGPHAGHGRIIMRSARHMLTMVNDLIDYARGD--PLD 520 LRTPL S L A ++ + + I + +L ++ND++D ++ + LD Sbjct: 486 LRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLD 545 Query: 521 -TPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISPDLPPVLALDARRLHRILGNLLD 579 P+ PL L E++ + AQ++ F +++ P +P + D +RL +IL NLL Sbjct: 546 IVPESFPLT--KLADELSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLS 603 Query: 580 NAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIAPQFQSRIFEPFERADAD-- 637 NA K+T +G + L + + DAG G + V DTG GI IFE F +AD Sbjct: 604 NAIKFTEKGEVSLRI-----YPDAG-GRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTH 657 Query: 638 RRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQLPAERGSEQDI---------- 687 R+ G G+GL+I R +GG I + S+ G G+ L LP SEQ + Sbjct: 658 RKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPLYSSEQAVSNTAPEPTPA 717 Query: 688 ----------------------------ASHHVQEHS--STRVLIDGAGRQVVVVEDSPE 717 A +QE S R I+ + R ++V+ED Sbjct: 718 AAAAASTLQAAHVATAPDVRINRTPAAAAPQRLQEISIDDDRDRIETSSRLILVIEDDAA 777 Query: 718 IARLLSDQLSSLGFAVSVFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAA 777 A +L D +GF V +A + P+ +L D LP G VL Sbjct: 778 FAMILRDLAREMGFQCVVTHSANEGVA-----AAEMYRPSAILMDMNLPDFSGLGVLDQI 832 Query: 778 RR--LLPEVPVLLLSATLHACELELDGDLRFDGSLLKPVNFSELQEMIARL 826 +R +PV ++S ++ E G + G LKPV EL I +L Sbjct: 833 KRNPKTRHIPVHVVSVADYSHEAMERGAI---GYALKPVQREELIGAIRKL 880 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 11/238 (4%) Query: 448 QAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASG--GPHAGHGRIIMRSARHMLT 505 + AD AN AKS FL +SH++RTP+ ILG ++++ SG + I + ++ Sbjct: 339 EEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVR 398 Query: 506 MVNDLIDYAR--GDPLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISPDLPPVL 563 ++ND++D+++ LD + + L+QE++ + QR+ F L + D P L Sbjct: 399 IINDILDFSKIESGKLDL-EMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHL--DCPENL 455 Query: 564 AL--DARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIAP 621 ++ D RL ++LGNLL NA K+T+ G + L + + D + + L ++DTG GI+P Sbjct: 456 SVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISP 515 Query: 622 QFQSRIFEPFERADA--DRRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQL 677 + ++F PF +AD+ RR G G+GLAI + V+ MGG+I +S PG TR ++ Sbjct: 516 EALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEI 573 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 15/240 (6%) Query: 444 RQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASGG--PHAGHGRIIMRSAR 501 R+ALQA N AKS FL+ +SH+ RTPL +LG++D ++ G P A + I S Sbjct: 322 REALQA----NQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGN 377 Query: 502 HMLTMVNDLIDYAR-GDPLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISPDLP 560 +L +VN +++ D P + L+ + AQ + I D+P Sbjct: 378 RLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVP 437 Query: 561 PVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIA 620 +L D R++ R+L NL+ NA +YT GR+ + V+ +G L + + DTG GIA Sbjct: 438 QILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVER------SGPQQLTMRIKDTGIGIA 491 Query: 621 PQFQSRIFEPFERADAD--RRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQLP 678 Q+ IFE F +AD R Q G G+GL I + V MGG +VL+S+ G+ LP Sbjct: 492 ASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,842,609 Number of extensions: 121669 Number of successful extensions: 689 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 635 Number of HSP's successfully gapped: 43 Length of query: 922 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 828 Effective length of database: 1,174,780 Effective search space: 972717840 Effective search space used: 972717840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)