BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0005.p (595 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 1105 0.0 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 434 e-123 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 405 e-114 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 404 e-113 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 399 e-112 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/589 (97%), Positives = 579/589 (98%), Gaps = 8/589 (1%) Query: 11 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 70 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES Sbjct: 1 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 60 Query: 71 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR 130 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR Sbjct: 61 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR 120 Query: 131 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER 190 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER Sbjct: 121 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER 180 Query: 191 AEEAAALRSVTSTTLIGGGAIALVLAVLLAWWLANNITRPLALAVQLARRVASGDLTARI 250 AEEAAALRSVTSTTLIGGGAIAL+LAVLLAWWLANNITRPLALAVQLARRVASGDLTARI Sbjct: 181 AEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARI 240 Query: 251 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS 310 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS Sbjct: 241 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS 300 Query: 311 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI 370 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI Sbjct: 301 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI 360 Query: 371 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI 430 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI Sbjct: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI 420 Query: 431 SDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD 490 SDSVAKVESGS+LVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD Sbjct: 421 SDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD 480 Query: 491 QVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPQAAPEAAPATVAAP 550 QVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEV APE APA+VAA Sbjct: 481 QVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEV----APEPAPASVAAS 536 Query: 551 RSGVRPATRSSRLPSPVG----PSASPMHPAPASGSRLSSADADEWVTF 595 RSGVRPATRSSRLPSPVG PSASPMHPAPASGSRLSSADADEWVTF Sbjct: 537 RSGVRPATRSSRLPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 276/585 (47%), Positives = 382/585 (65%), Gaps = 12/585 (2%) Query: 16 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLINIE 75 + +G +L + F V + ++ S++ NF RL A+ +N+HTY+V + M +++NIE Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNMVNIE 64 Query: 76 TGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQRWLKSA 135 TG RG+ SG +A L+PY G FK A + ++LT+DN +QQ+RL E+ + + ++ Sbjct: 65 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNK-IEEI 123 Query: 136 IDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGERAEEAA 195 I+LR+ Q A F A K MD RV+ + E +LL ER E Sbjct: 124 DQNLIKLRKEANASGSQQALQTYF-GATHDKIFMDRFRVVQKEFVDAEESLLKERGELVR 182 Query: 196 ALRSVTSTTLIGGGAIALVLAVLLAWWLANNITRPLA----LAVQLARRVASGDLTARIE 251 +L T +I GA+ ++LA+ + +I L A +A+++A+GDLT + Sbjct: 183 SLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVAVP 242 Query: 252 VRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSL 311 ++ D + +L+ +L M E L IV G++ E I+ A++EIATGN DLS RTE+QA+SL Sbjct: 243 LKPND-SHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASL 301 Query: 312 EETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIV 371 EETASSMEELTSTV+QN+ NAR+AN +A+ AS +A+ GG VV+RV+DTM EI+DSS K+ Sbjct: 302 EETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVS 361 Query: 372 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIS 431 DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK++K LI+ Sbjct: 362 DIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLIT 421 Query: 432 DSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQ 491 S +VE G+ LV EAG T+ E+V++V+ VT+++NEI+AA EQ +GIEQV+QA+ QMDQ Sbjct: 422 LSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQ 481 Query: 492 VTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPQAAPEAAPATVAAPR 551 VTQQNAALVEQAAAA+Q++ EQA EL AV VF+ G A++ P +P A AP+ Sbjct: 482 VTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTAVQPRP-VSPRPAKVVNPAPK 540 Query: 552 SGVRPATRSSRLPSPVGPSASPMHPAPASGSRLSSADAD-EWVTF 595 G A ++ LP +A + S +ADA EW TF Sbjct: 541 VG---AAKTRALPPKAAATAHTANAVKKEASSPKAADASGEWETF 582 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust. Identities = 259/467 (55%), Positives = 326/467 (69%), Gaps = 21/467 (4%) Query: 138 PAIELRRAV-REGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGERAEEAAA 196 P IE A+ +E E+M+A+ +Q + M+S + + + L E + AA Sbjct: 117 PEIERNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAA 176 Query: 197 LRSVTSTTLIGGGAIAL--------VLAVLLAWWLANNITRPLALAVQLARRVASGDLTA 248 L + + G +A+ VLA+ L+WW+A + RPLA AV +AR+VA+GDLTA Sbjct: 177 LSDADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTA 236 Query: 249 RIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQA 308 I RDETG LL AL+ MN +L+ IV VR+GT+ I TAS+EIATGN+DLSSRTEQQA Sbjct: 237 DIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQA 296 Query: 309 SSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSR 368 +LEETAS+MEELTSTV+QN+ NAR+AN++A AS++A +GG VV +VV TM INDSSR Sbjct: 297 GALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSR 356 Query: 369 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKA 428 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIKA Sbjct: 357 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKA 416 Query: 429 LISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQ 488 LI DSVAKV++GS LV+EAG TM E+V SV+RV++++ EI+AAG EQ GIEQ++ AV Q Sbjct: 417 LIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQ 476 Query: 489 MDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPQAAPEAAPATVA 548 MD+ TQQNAALVEQAAAA+++LQEQA L++ VSVFRL+A V +AA A P Sbjct: 477 MDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDI 536 Query: 549 APRSGVRPATRSSRLPSPVGPSASPMHPAPASGSRLSSADADEWVTF 595 P RPA SR S + PA + +SA+ +W F Sbjct: 537 TP---ARPALAQSR---------SKVMARPAHSNTSASAEQGDWEQF 571 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/326 (69%), Positives = 274/326 (84%), Gaps = 1/326 (0%) Query: 212 ALVLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNES 271 A++ A++L + +A +I +PL AV++A VA+GDLT RIE SRDETG L+ AL+ MN++ Sbjct: 202 AVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDN 261 Query: 272 LVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTAN 331 L+ IVSGVRRGTE I TAS EIA+GNLDLS+RTEQQA SLEETAS+MEE+TSTV+QN N Sbjct: 262 LIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADN 321 Query: 332 AREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNA 391 AR+AN+MA +AS+IA GG +V RVV TM+EIN SSRKIVDII VIDGIAFQTNILALNA Sbjct: 322 ARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNA 381 Query: 392 AVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTM 451 AVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIKALI+DSV KVE GS LV +AG TM Sbjct: 382 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATM 441 Query: 452 REIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQ 511 ++V SV+ VT+++ EISAA EQ SGIE++++AV QMD+ TQQNAALVEQAAAA++S+Q Sbjct: 442 EQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQ 501 Query: 512 EQAQELAQAVSVFRLEAGQA-LEVAP 536 EQA L Q++S+F+LE G A + AP Sbjct: 502 EQAVRLTQSISIFKLEQGAASIPAAP 527 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 272/535 (50%), Positives = 350/535 (65%), Gaps = 45/535 (8%) Query: 13 LADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQL----RAMA 68 + ++ IG RL +GF L+ +I+ + + A T E+ A+ R MA Sbjct: 4 IGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQA------TREMMAEPLKTERLMA 57 Query: 69 ESLINIETG-QRGFSLS-GIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSD 126 + N+ G +R +++ D +L PY A E + S Q+Q LS Sbjct: 58 DWYTNLVAGIRRTIAIAKSSDPALGPYF--------AAEVAASSKSSGEYQKQVEALLST 109 Query: 127 SEQRWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQM---------------DS 171 E++ L I ELR+ R+++ A AG + M D+ Sbjct: 110 PEEKALFQKIG---ELRKLYLSSRDEINKAKA---AGNTEEAMRILDQVFVPNATAYQDT 163 Query: 172 MRVLLDDLDRTESALLGERAEEAAALRSVTSTTLIGGGAIALVLAVLLAWWLANNITRPL 231 MR L+D R E + + A E A+ + + T ++ + L+L ++ A +L IT+PL Sbjct: 164 MRKLVD-FQRKE---MDDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPL 219 Query: 232 ALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASS 291 AV ++R VA GDL++ I V SRDETG LL +LKDMN+SL IVS VR GT+ I+TASS Sbjct: 220 HRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASS 279 Query: 292 EIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGG 351 EIA GNLDLSSRTEQQASSL ETAS+MEEL STV+QN NAR+A+++A +AS +A GGG Sbjct: 280 EIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGG 339 Query: 352 VVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 411 VV++VVDTM IN SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE Sbjct: 340 VVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 399 Query: 412 VRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAA 471 VR+LAQRSA+AAKEIK LI+DSV KV+ GS LV +AG+TM+E+V SV+RVT+++ EISAA Sbjct: 400 VRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAA 459 Query: 472 GEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 526 EQ GIEQ++ A+ QMDQVTQQNAALVE+AAAA+ S+Q QA L Q VSVFRL Sbjct: 460 STEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,034,093 Number of extensions: 29857 Number of successful extensions: 504 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 72 Length of query: 595 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 504 Effective length of database: 1,188,985 Effective search space: 599248440 Effective search space used: 599248440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)