BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0004.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310694|ref|YP_003774786.1| MerR-family transcription regul...   420   e-119
gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416...    84   1e-17

>gi|300310694|ref|YP_003774786.1| MerR-family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  420 bits (1079), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/219 (97%), Positives = 214/219 (97%)

Query: 1   LLAGPWISSTACIEALHQQQASVSAAVQDLEELRQSSLGPDTGVALLLVESAVLDPGLGG 60
           +LAGPWISST CIEAL QQQASVSAAVQDLEELRQSSLG DTGVALLLVESAVLDPGLGG
Sbjct: 112 VLAGPWISSTGCIEALRQQQASVSAAVQDLEELRQSSLGLDTGVALLLVESAVLDPGLGG 171

Query: 61  RMESVRRSFASARVVILYRFGSPEMVARLTQAGHQLVRKPMDGIDPAWLCELVRRLDLPP 120
           RMESVRRSFASARVVILYRFGSPEMVARLTQAGHQLVRKPMDGIDPAWLCELVRRLDLPP
Sbjct: 172 RMESVRRSFASARVVILYRFGSPEMVARLTQAGHQLVRKPMDGIDPAWLCELVRRLDLPP 231

Query: 121 GEVQMDSPAVPAPRFSEAELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESE 180
           GEVQMDSP VPAPRFSEAELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESE
Sbjct: 232 GEVQMDSPDVPAPRFSEAELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESE 291

Query: 181 EEAALHRELCLAAGRARLPLEEALQRLAQVKGISLPSGQ 219
           EEAALHRELCLAAGRARLPLEE LQRLAQVKGISLPSGQ
Sbjct: 292 EEAALHRELCLAAGRARLPLEETLQRLAQVKGISLPSGQ 330


>gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 44  VALLLVESAVLDPGLGGRMESVRRSFASARVVILYRFGSPEMVARLTQAGHQLVRKPM-D 102
           V  LL+    L  G  G +ES   + +   + +LY F S  +   L   G  L+R P  D
Sbjct: 167 VDALLLHEPQLHAGWLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPD 226

Query: 103 GIDPAWLCELVRRLDLPPGEVQMDSPAVPAPRFSEAELAQVSQASTRMQCECPRHLAELL 162
            +   WL  LV  L  P  E       +P  R+S+ +L   +  ST + CECPRH+AELL
Sbjct: 227 VVILQWLRGLVA-LSSPAREEMAAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELL 285

Query: 163 TALVGFERYSRQCEDESEEEAALHRELCLAAGRARLPLEEALQRLAQVKGI 213
             L  FERYS QC + +  +A LH+ L      +R   E AL R+A+ +G+
Sbjct: 286 MQLSQFERYSAQCANRNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGL 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 666,915
Number of extensions: 25589
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)