BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0003.p (575 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 524 e-150 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 288 7e-79 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 164 2e-41 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 142 6e-35 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 139 8e-34 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 524 bits (1349), Expect = e-150, Method: Compositional matrix adjust. Identities = 268/279 (96%), Positives = 274/279 (98%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 KVNTGARSLRNAI+ARNPEEQKKYLDRMDTYTSQVSEHLAEMEKR NTP+GSEL+AALKQ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 RADYSKER+KVV+LIHQQKRDEATAHLFDK IPVQDKYFAAVKEMVSFQSSLMDKSAER Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQI+AT Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 SKDETG LLGALKSMNDNLHRIV EVRAGTDTINTASRE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASRE 280 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 288 bits (737), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 159/279 (56%), Positives = 204/279 (73%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 MK+ D+KISVRL CFA LI VMC+I GVG+K+L +S ++ IV DRY K+AL +I D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 VN AR+LRNA+L RN EE +YLDR +++ +E L +MEK ++T +G EL ++++ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 R+ Y+ R K+ ELI QQK++EA LF + IP QDKYF + + V+FQ SLM++S Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 + SAI +ML LS VA+ L + A L+TRSITRPLNEAV VA+AVAAGDLTVQI AT Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 SKDETG LL ALKSMND+LHRIV+EVR G+DTINTAS E Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAE 279 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 163/279 (58%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 M+ +++ I+ RL F+ LI+V+ I +G+ L ++ A D +VNDRY K+A+ I+ Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 KV+ A SLRN +L +P + +++ +++ ++ E+ + V P+ + + + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 TR Y+ R ++ +L +D A + + +P+Q YF+ + E+ Q LMD+S ++ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 A AA + IM++ +A +A A I+RSITRPL+ AV+VA VAAGDLT I A Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 S DETG LL AL +MN L IV EVR GTD++ TAS + Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQ 279 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 151/280 (53%), Gaps = 9/280 (3%) Query: 5 DMKISVRLGACFA---ALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDK 61 ++K++VRL A FA AL+ V+ V A + + N ++ A D+IVNDRY+KV + D Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINN---INRAIDQIVNDRYLKVRWAFDLRDG 63 Query: 62 VNTGARSLRN-AILARN-PEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALK 119 VN + LR AI N P +K++ +++ Q E L ++ R T G + AL Sbjct: 64 VNEQIKYLRGIAIDIENRPANEKRFA-QLEVAVKQTKEALDKITARQVTAVGQKKAKALD 122 Query: 120 QTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAE 179 + R + + + L+ A ++ K Q+ Y A + Q + + Sbjct: 123 EARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGA 182 Query: 180 RASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDA 239 +A A + AI + L S AVL + + L+ RSI +PL EAV+VA VAAGDLT +I+ Sbjct: 183 KAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEP 242 Query: 240 TSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 S+DETG L+ AL+ MNDNL IV+ VR GT++I TAS E Sbjct: 243 HSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGE 282 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 139 bits (349), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 160/285 (56%), Gaps = 20/285 (7%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVN- 63 ++KI VRL F AL+++M V+ +GV L + DATD++ ++AL + D V Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMT-----RIALKKE-RDAVQW 56 Query: 64 ------TGARSLRNAILARNPEEQKKYLDR-MDTYTSQVSEHLAEMEKRVNTPKGSELMA 116 G R+ A++ + + + Y + +D ++++S+ E+E + + L Sbjct: 57 HAAIKENGVRTF--AVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFD 114 Query: 117 ALKQTRADYSKERLKVVELIHQQKRDEATA-HLFDKA-IPVQDKYFAAVKEMVSFQSSLM 174 + + RA Y R + ++ + D+A A + D + + D Y V FQ ++ Sbjct: 115 EVGKLRAAYRATRQSIFDV--KTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVI 172 Query: 175 DKSAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLT 234 D++A + S +++L L + ++L A A L+TRSITRPLN+AV +A VAAGDLT Sbjct: 173 DQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLT 232 Query: 235 VQIDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 +ID++S+DETG LL ALK+MN NL IV VR GT+TINTASRE Sbjct: 233 SRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASRE 277 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.129 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,052,552 Number of extensions: 30279 Number of successful extensions: 279 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 49 Length of query: 575 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 485 Effective length of database: 1,193,720 Effective search space: 578954200 Effective search space used: 578954200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)