BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0050.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase [Her...   898   0.0  
gi|300313586|ref|YP_003777678.1| acetylglutamate kinase [Herbasp...   113   3e-26

>gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/440 (99%), Positives = 439/440 (99%)

Query: 1   MRVMEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALGIRV 60
           MRVMEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALGIRV
Sbjct: 12  MRVMEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALGIRV 71

Query: 61  VVVHGSRPQVAEQLALRNVEARFHNGLRVTDSAALECAKEAAGELRLDIEAAFSQGLPNT 120
           VVVHGSRPQVAEQLALRNVEARFHNGLRV DSAALECAKEAAGELRLDIEAAFSQGLPNT
Sbjct: 72  VVVHGSRPQVAEQLALRNVEARFHNGLRVADSAALECAKEAAGELRLDIEAAFSQGLPNT 131

Query: 121 PMAHSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFS 180
           PMAHSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFS
Sbjct: 132 PMAHSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFS 191

Query: 181 PTGEAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFL 240
           PTGEAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFL
Sbjct: 192 PTGEAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFL 251

Query: 241 SPEAAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQATI 300
           SPEAAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQATI
Sbjct: 252 SPEAAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQATI 311

Query: 301 EDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEM 360
           EDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEM
Sbjct: 312 EDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEM 371

Query: 361 ACLTVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQ 420
           ACLTVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQ
Sbjct: 372 ACLTVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQ 431

Query: 421 DRQQIYNWQRKSQVLIKNLY 440
           DRQQIYNWQRKSQVLIKNLY
Sbjct: 432 DRQQIYNWQRKSQVLIKNLY 451


>gi|300313586|ref|YP_003777678.1| acetylglutamate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 16/284 (5%)

Query: 14  LRSVAPYVHAFRGKTFVVAFPGELVTAGDLQ-VLAQDLSLLHALGIRVVVVHGSRPQVAE 72
           L    PY+  F GKT VV + G  +T   L+   A+D+ LL  +G+  VVVHG  PQ+  
Sbjct: 17  LAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHGGGPQIDA 76

Query: 73  QLALRNVEARFHNGLRVTDSAALECAKEA-AGELRLDIEAAFSQGLPNTPMAHSAIRVI- 130
            L     +  F  G+R+TD   +E  +    GE++ DI    +           A+ +  
Sbjct: 77  ALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH------YGGQAVGLTG 130

Query: 131 -SGNFVTARPMGVIDG------VDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG 183
             G  + AR M + D       +D+   G +  I   V++ + +   I ++SP+GF   G
Sbjct: 131 KDGGLIRARKMQMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPIISPIGFGDDG 190

Query: 184 EAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFLSPE 243
           +A+N+  + VA   A  L AEKLI ++    + D  G  + +LS+ + + + + G +S  
Sbjct: 191 QAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMFADGTISGG 250

Query: 244 AAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMV 287
               ++S + A  +GV+  HI+    + S LLE+ T    GTM+
Sbjct: 251 MLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,349,122
Number of extensions: 56083
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)