BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0048.p (1355 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Her... 2765 0.0 >gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 1355 Score = 2765 bits (7168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1351/1355 (99%), Positives = 1351/1355 (99%) Query: 1 MSVTKAPTPAPAAQPQKNPQQERAGGQRDARGPRRTDSAAEAAPAPAPLRNPLPPVTFPE 60 MSVTKAPTPAPAAQPQKNPQQERA GQRDARGPRRTDSAAEAAPAPAPLRNPLPPVTFPE Sbjct: 1 MSVTKAPTPAPAAQPQKNPQQERARGQRDARGPRRTDSAAEAAPAPAPLRNPLPPVTFPE 60 Query: 61 ELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAA 120 ELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAA Sbjct: 61 ELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAA 120 Query: 121 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII 180 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII Sbjct: 121 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII 180 Query: 181 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGREVKGEIVPAPVI 240 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGREVKGEIVPAPVI Sbjct: 181 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGREVKGEIVPAPVI 240 Query: 241 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD 300 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD Sbjct: 241 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD 300 Query: 301 ELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR 360 ELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR Sbjct: 301 ELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR 360 Query: 361 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV 420 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV Sbjct: 361 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV 420 Query: 421 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA 480 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA Sbjct: 421 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA 480 Query: 481 DGYQLLQELGAVEEHGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV 540 DGYQLLQELGAVEE GGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV Sbjct: 481 DGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV 540 Query: 541 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN 600 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN Sbjct: 541 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN 600 Query: 601 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQY 660 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQY Sbjct: 601 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQY 660 Query: 661 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW 720 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW Sbjct: 661 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW 720 Query: 721 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAP 780 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAP Sbjct: 721 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAP 780 Query: 781 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAAD 840 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAAD Sbjct: 781 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAAD 840 Query: 841 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN 900 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN Sbjct: 841 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN 900 Query: 901 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKTFGRGNLI 960 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERK FGRGNLI Sbjct: 901 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKAFGRGNLI 960 Query: 961 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA 1020 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA Sbjct: 961 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA 1020 Query: 1021 RQQFQKLAEQVAIAPREDEDNAAPSPAAATGKGGTSAAPAAAAPASVGEYSNLTSWSFGE 1080 RQQFQKLAEQVAIAPREDEDNAAPSPAAAT KGGTSAAPAAAAPASVGEYSNLTSWSFGE Sbjct: 1021 RQQFQKLAEQVAIAPREDEDNAAPSPAAATSKGGTSAAPAAAAPASVGEYSNLTSWSFGE 1080 Query: 1081 LPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKE 1140 LPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKE Sbjct: 1081 LPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKE 1140 Query: 1141 QLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG 1200 QLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG Sbjct: 1141 QLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG 1200 Query: 1201 KARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY 1260 KARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY Sbjct: 1201 KARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY 1260 Query: 1261 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRADPKMTEFR 1320 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRADPKMTEFR Sbjct: 1261 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRADPKMTEFR 1320 Query: 1321 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 1355 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR Sbjct: 1321 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 1355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,016,026 Number of extensions: 166365 Number of successful extensions: 635 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 635 Number of HSP's successfully gapped: 1 Length of query: 1355 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1258 Effective length of database: 1,160,575 Effective search space: 1460003350 Effective search space used: 1460003350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)