BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0047.p
         (492 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   416   e-117

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/459 (48%), Positives = 309/459 (67%), Gaps = 11/459 (2%)

Query: 36  LADPLLARPPELDHGKPLPADSEVHPCDQSLPLSDKTLTLSDAIDIALCHHPQVNAAWAR 95
           + DPLLARPP+L  G+ LP D +   C  S  ++ K L+L+DAID ALC  PQ+ AAWA 
Sbjct: 35  IGDPLLARPPDLITGRLLPGDDQRVECAASPYVAGKALSLADAIDQALCQQPQIQAAWAA 94

Query: 96  IKIQAAQVGQARSSYLPTINAGVRYQQEKTRQPDSTLFRDSERSGRSEYYTLTWRLLDFG 155
           IK+QAAQ+G+AR+ YLPT+ +G       T+    +      RS  + Y TLTWRLLDFG
Sbjct: 95  IKLQAAQLGEARAGYLPTVTSGASKLNSATQYEGGS----GRRSLTTLYATLTWRLLDFG 150

Query: 156 ARGANRRLSDALLEGALASHDAALQKTMGTAITAYFEAQTSAARRDARESNETLARQIVE 215
            R AN+R +DA+L+ ALASHDAA+QK + + + +Y+E Q+S+A + ARE ++ LARQ++E
Sbjct: 151 GRSANQRAADAMLQSALASHDAAVQKALASVVASYYEVQSSSASQQAREKSQQLARQLLE 210

Query: 216 ATMKRAARGAAAQTDILQVQTALAKAELEHVRAIGQHERSLVALSIALGMQGRAMRFQVL 275
             ++R  RG  +  + LQ +T LAKAELE  RA GQH+++   L+ A+G+   A    VL
Sbjct: 211 TAIRREQRGVGSLPETLQARTFLAKAELEQARASGQHKKAQAMLAAAMGLLREAQDVPVL 270

Query: 276 PADPASS--PDTASAGMARDLTEWLQAAQQQHPALTAARAQLAASRQKLIAVRSEGLPTL 333
              P     PD    G+ ++L  WLQAA+Q HPA+ AARAQL A+R+KL   RSEG+PTL
Sbjct: 271 TLVPEQEEYPD----GLEQNLPAWLQAARQYHPAILAARAQLEAAREKLQVARSEGMPTL 326

Query: 334 EFNQSYFVNGRPNQGSTGGRTREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDVREAELME 393
           + +   + NGRPNQ    G  RE + GL+L +P+F+GF+  YKV  AQAQI+ REAEL E
Sbjct: 327 DLSARQYANGRPNQAGNRG-DRERMVGLNLTVPIFEGFARDYKVGGAQAQIEAREAELQE 385

Query: 394 TQDQVLGEIARAHADTAAALRNLASSRRLQESAIQALENVQRKYERGLIDTLEVLNVQAA 453
            Q QVLG+IA  +A+   AL +L+SSRRL ++A  A+++V+RKY+ G  D +E+LN Q A
Sbjct: 386 VQTQVLGDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEMLNAQTA 445

Query: 454 LVDAREERIRTLVEWRSARLRLLASAGEISRTRIAEQGR 492
           L +A +ER++ + +WRSARLRLLA+AG + R  +A   R
Sbjct: 446 LSEADQERVKAMSDWRSARLRLLANAGRMGRWAVAGNAR 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,180,201
Number of extensions: 41121
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 9
Length of query: 492
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,198,455
Effective search space: 482977365
Effective search space used: 482977365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)