BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0045.p (728 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1122 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 283 3e-77 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 271 1e-73 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 233 3e-62 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 226 6e-60 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1122 bits (2901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/706 (75%), Positives = 616/706 (87%), Gaps = 4/706 (0%) Query: 18 DSGLLCLLMMAKLHGIPVDPHQLQHQYGREPFTIETIQLAARKLGLMARCVQQDRTRLDR 77 DSGL CL+MMA+LHGI D QLQH++GR+PF ++TI LAAR LG+ A+C+ Q R RL+R Sbjct: 14 DSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMTAKCLHQQRERLER 73 Query: 78 APLPAVAVDKMGQFLLVGKIDKSQPV----WRILVQRPGQRPAVMLRPDFEHCWNGQLIF 133 PLPA+ +D+ G+F ++ K++++Q RILVQ+PGQ P V+ + DFE W+GQ+I Sbjct: 74 TPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQRDFEALWSGQVIL 133 Query: 134 MTSKASFAGAMSKFDFTWFIPAVVKYRKTLGEILLISLMLQLIALCTPLFFQVVMDKVLV 193 TSKAS+A S+FDF+WFIPAVVKYRKTL E+LLISL+LQLI L TP+FFQVVMDKVLV Sbjct: 134 FTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLV 193 Query: 194 NHAMKTLNVIAVGLVAATLFEAILGGIRTALFAHTSSKIDVELGSRLFSHLLSLPISYFQ 253 NHAM TLNVIAVGL+AAT+FEA+L GIRTA+FA+ SSKIDVELGSRLFSHLLSLP+SYFQ Sbjct: 194 NHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQ 253 Query: 254 ARRAGDSVARIRELENIRSFLTSNAMTLVLDIVFSFVFLGVMLWYSVTLSLVVLASIPLY 313 RRAGDS+AR+RELENIRSFLT NAMTLVLDI+FSFVFLGVMLWYSV+LSL+VLASIP+Y Sbjct: 254 VRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVY 313 Query: 314 LALSFVFTPVLRRRLDDKFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDRQLAAYV 373 + LS VFTP+LR RL+DKFNK AENQ+FLVETLTGMDTVKAMAVEPRWQQKWD+QLAAYV Sbjct: 314 VLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYV 373 Query: 374 AASLSTTNIGLMASGGVSLISKLATAAIMWLGATLVIDNQLTVGELIAFNMLAGQVSSPI 433 AA L+TTNI L+ASG V L+SKL T IMWLGA LV+ N+++VGEL+AFNMLAGQV+SPI Sbjct: 374 AAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPI 433 Query: 434 LRLAQLWNDFQQVGISMSRLGDVLDTRPEIDGKKTRLPRLTGAIDFDQVFFRYRPEASDV 493 LRLAQLWNDFQQ+GISMSRL DVLD R E+ G +TRLPR+ GAI FD V FRYRPE +V Sbjct: 434 LRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEV 493 Query: 494 IRSLSLQVRPGEVIGIVGRSGSGKSTLTKLVQRLHVCDRGRVMVDGQDIAIIDTASLRQQ 553 IR LSLQ+RPGEVIGIVGRSGSGKSTL KLVQRL++C+ GR+ VDGQDIAIIDTASLRQQ Sbjct: 494 IRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQ 553 Query: 554 IGVVLQENMLFSRSIRDNIALSDPSMPIEKIIAVAKLAGAHEFICELPEAYDTLVGEHGT 613 IGVVLQEN LFSRSIRDNIAL+DPS PIE+II AKLAGAH+FICELPE YDT+VGE G+ Sbjct: 554 IGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGS 613 Query: 614 GLSGGQRQRIAIARVLITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRL 673 GLSGGQRQRIAIAR LITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRL Sbjct: 614 GLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRL 673 Query: 674 SAVRDAHRIIVMDKGQIVESGSHDELLKQARGLYAHLYGLQTAQGA 719 SAVRDA RIIVM++G++ ESGSHDEL+ G+YAHL+ LQ Sbjct: 674 SAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAGHAG 719 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 283 bits (725), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 198/558 (35%), Positives = 301/558 (53%), Gaps = 19/558 (3%) Query: 178 LCTPLFFQVVMDKVLV---NHAMKTLNVIAV---GLVAATLFEAILGGIRTALFAHTSSK 231 L P +MD VL+ N A ++ + GL+ A + LG RT + A S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 232 IDVELGSRLFSHLLSLPISYFQARRAGDSVARI-RELENIRSFLTSNAMTLVLDIVFSFV 290 I +L + +SHLL L YF +R GD +ARI E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 291 FLGVMLWYSVTLSLVVLASIPLYLALSFVFTPVLRRRLDDKFNKGAENQAFLVETLTGMD 350 +++ + L+LV L +P + V LR + +E L +T+ G+ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIR 376 Query: 351 TVKAMAVEPRWQQKWDRQLAAYVAASLSTTNIGLMASGGVSLISKLATAAIMWLGATLVI 410 VKA A E R ++ + + I + + V+ ++++ + G V Sbjct: 377 VVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVS 436 Query: 411 DNQLTVGELIAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLD---TRPEIDGKK 467 NQ+TVG L AF + + + ++++ + Q+ R+ D+LD + PE Sbjct: 437 SNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE-PANP 495 Query: 468 TRLPRLTGAIDFDQVFFRYRPEASDVIRSLSLQVRPGEVIGIVGRSGSGKSTLTKLVQRL 527 L ++ GAI+ + FRY A VIR++SL + PGE+IG+VG SGSGKST+ L+ R Sbjct: 496 VHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRF 553 Query: 528 HVCDRGRVMVDGQDIAIIDTASLRQQIGVVLQENMLFSRSIRDNIALSDPSMPIEKIIAV 587 + G + +DG DI + + R+ IG+VLQE LF +I +NIA P E+IIA Sbjct: 554 YDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAA 613 Query: 588 AKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARVLITNPGILIFDEATSALDY 647 A+ A AHEFI LP+ YD+LVGE G LSGG+RQRI+IAR L+ +P ILI DEATS++D Sbjct: 614 ARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDT 673 Query: 648 ESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVMDKGQIVESGSHDELLKQARGLY 707 +EK IQ + + GRT + IAHRLS +R A R++V+D+GQ+VE G+H+EL+ + Sbjct: 674 TTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMARE---- 729 Query: 708 AHLYGLQTAQGAPRNAMG 725 H Y L AQ RN G Sbjct: 730 GHYYKLYQAQA--RNPEG 745 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 174/517 (33%), Positives = 285/517 (55%), Gaps = 16/517 (3%) Query: 209 AATLFEAILGGIRTALFAHTSSKIDVELGSRLFSHLLSLPISYFQARRAGDSVARI---- 264 A L A+ +R +FA + + + ++F HL +L + + R+ G I Sbjct: 90 ALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGT 149 Query: 265 RELENIRSFLTSNAMTLVLDIVFSFVFLGVMLWYSVTLSLVVLASIPLYLALSFVFTP-- 322 R + ++ S+ + + +++I +L + Y V S++ ++ Y+ + T Sbjct: 150 RGVSSLVSYTLFSILPTLIEIALVLAYL--ITHYDVWFSVITAGALVCYILFTITVTEWR 207 Query: 323 VLRRRLDDKFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDRQLAAYVAASL-STTN 381 RR ++ + A +A +++L +TVK E +++D L Y A++ S ++ Sbjct: 208 THFRRTMNELDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSS 265 Query: 382 IGLMASGGVSLISKLATAAIMWLGATLVIDNQLTVGELIAFNMLAGQVSSPILRLAQLWN 441 + L+ +G ++I+ +A I+W VID +T+G+++ N Q+ P+ L L+ Sbjct: 266 LSLLNTGQSAIIA-IAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYR 324 Query: 442 DFQQVGISMSRLGDVLDTRPEI-DGKKTRLPRLTGA-IDFDQVFFRYRPEASDVIRSLSL 499 + +Q M RL +L+ E+ D + + GA + FD V F Y ++ + Sbjct: 325 EIKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDF 383 Query: 500 QVRPGEVIGIVGRSGSGKSTLTKLVQRLHVCDRGRVMVDGQDIAIIDTASLRQQIGVVLQ 559 V+ G +VG SGSGKSTL++L+ R + D G + +DGQD+ + ASLRQ IG+V Q Sbjct: 384 TVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQ 443 Query: 560 ENMLFSRSIRDNIALSDPSMPIEKIIAVAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQ 619 + +LF+ +I NIA P E+I+A AK A H+FI LP+ Y ++VGE G LSGG+ Sbjct: 444 DTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGE 503 Query: 620 RQRIAIARVLITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDA 679 +QR+AIAR L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A Sbjct: 504 KQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNA 563 Query: 680 HRIIVMDKGQIVESGSHDELLKQARGLYAHLYGLQTA 716 +I+V+D G+IVE G+H LL A GLYA ++ Q A Sbjct: 564 QQILVLDHGRIVERGTHAGLL-MAGGLYAQMWLRQQA 599 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 233 bits (595), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 189/586 (32%), Positives = 307/586 (52%), Gaps = 37/586 (6%) Query: 152 FIPAVVKYRKTLGEILLISLMLQLIALCTPLFFQVVMDKVLVNHAMKTLNVIAVGLVAAT 211 +P + Y+K L ++ L P F+ ++D K+ + I + +A Sbjct: 39 LLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALF 98 Query: 212 LFEAILG---GIRTALFAHTSSKIDVELGSRLFSHLLSLPISYFQARRAGDSVARIRELE 268 ILG +R + + ++ +L S +++H+++ +F+ + G+ ++R+ Sbjct: 99 GVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDT 158 Query: 269 NIRSFLTSNAMTLVLDIVFSFVFLGVMLWYS----VTLSLVVLASIPLYLALSFVFTPVL 324 + L ++++ L F+ ML+++ ++ +V+LA++ L VF Sbjct: 159 TLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAV----VLPIVFYGRR 214 Query: 325 RRRLDDKF-NKGAENQAFLVETLTGMDTVKAMAVEP----RWQQKWDRQLAAYV----AA 375 R+L ++ A+ A E L M TV+A E R+ Q +R + A Sbjct: 215 VRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRAR 274 Query: 376 SLSTTNIGLMASGGVSLISKLATAAIMWLGATLVIDNQLTVGELIAFNMLAGQVSSPILR 435 SL T L+ G + + +WLGA V++ ++ GEL F + A V+ + Sbjct: 275 SLLTVVAILLVFGAIVFV--------LWLGAHAVMEGSMSGGELGQFILYASLVAGSLGA 326 Query: 436 LAQLWNDFQQVGISMSRLGDVLDTRPEIDGK--KTRLPRLTG---AIDFDQVFFRY--RP 488 L+++ D Q+ + RL D+L + +LP T A+ V F Y RP Sbjct: 327 LSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRP 386 Query: 489 EASDVIRSLSLQVRPGEVIGIVGRSGSGKSTLTKLVQRLHVCDRGRVMVDGQDIAIIDTA 548 + + LSL V+PGE + IVG SG+GK+TL +L+ R + +G++++DG DI +D Sbjct: 387 GHPSLTQ-LSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQ 445 Query: 549 SLRQQIGVVLQENMLFSRSIRDNIALSDPSMPIEKIIAVAKLAGAHEFICELPEAYDTLV 608 +LR IG+V Q+ ++FS + +NI P ++IA A++A AHEFI LP +Y + Sbjct: 446 ALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGSYACFL 505 Query: 609 GEHGTGLSGGQRQRIAIARVLITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLI 668 GE G LSGGQRQRIAIAR L+ NP +L+ DEATSALD ESE+++Q + GRT L+ Sbjct: 506 GERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLV 565 Query: 669 IAHRLSAVRDAHRIIVMDKGQIVESGSHDELLKQARGLYAHLYGLQ 714 IAHRL+ V+ A RIIV++ G+IVESG+H EL+ + GLYA L LQ Sbjct: 566 IAHRLATVQRADRIIVLEHGRIVESGTHAELVAR-DGLYAGLAALQ 610 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 226 bits (575), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 171/569 (30%), Positives = 286/569 (50%), Gaps = 16/569 (2%) Query: 159 YRKTLGEILLISLMLQLIALCTPLFFQVVMDKVLVNHAMKTLNVIAVGLVAATLFEAILG 218 Y+K L + ++ P FQV++DK V +L ++ V ++ I Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Query: 219 GIRTALFAHTSSKIDVELGSRLFSHLLSLPISYFQARRAGDSV-ARIRELENIRSFLTSN 277 + + S++I EL ++F+ +L LP+ ++ G + + + E++ I +T Sbjct: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 Query: 278 AMTLVLDIVFSFVFLGVMLWYSVTLSLVVLASIPLYLALSFVFTPVLRRRLDDKFNKGAE 337 +++ + L +L+ + L++V L +PL + L++ D AE Sbjct: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAE 195 Query: 338 NQAFLVETLTGMDTVKAMAVEPRWQQKWDRQ---LAAYV----AASLSTTNIGLMASGGV 390 + ET +K + +++++R+ L +Y AA ST I Sbjct: 196 MTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPI-------T 248 Query: 391 SLISKLATAAIMWLGATLVIDNQLTVGELIAFNMLAGQVSSPILRLAQLWNDFQQVGISM 450 L++ A A ++ + + Q+TVG ++F + +P+ +LA++ Q+ + Sbjct: 249 QLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAA 308 Query: 451 SRLGDVLDTRPEIDGKKTRLPRLTGAIDFDQVFFRYRPEASDVIRSLSLQVRPGEVIGIV 510 + ++D E + R TG +DF +V F Y +++++L V GE I V Sbjct: 309 EEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFV 368 Query: 511 GRSGSGKSTLTKLVQRLHVCDRGRVMVDGQDIAIIDTASLRQQIGVVLQENMLFSRSIRD 570 G SG GKSTL L+ + C G + +DG+DI I SLRQQI +V Q +LF ++ Sbjct: 369 GMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAA 428 Query: 571 NIALSDPSMPIEKIIAVAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARVLI 630 NIA D + ++ A + A + + LPE T +G++G+ LSGGQRQR+AIAR + Sbjct: 429 NIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIY 488 Query: 631 TNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVMDKGQI 690 + ILI DEATSALD ESE+ +Q + ++ GRT +IAHRLS + A RI+V+ GQI Sbjct: 489 KDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQI 548 Query: 691 VESGSHDELLKQARGLYAHLYGLQTAQGA 719 E G+H LL+Q G+YA+LY LQ +Q A Sbjct: 549 AEIGTHQALLEQ-EGVYANLYRLQFSQQA 576 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,110,050 Number of extensions: 86580 Number of successful extensions: 763 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 606 Number of HSP's successfully gapped: 130 Length of query: 728 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 636 Effective length of database: 1,184,250 Effective search space: 753183000 Effective search space used: 753183000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 134 (56.2 bits)