BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0039.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...   439   e-124
gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...    61   9e-11

>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 221/221 (100%)

Query: 1   MHAAITPRLHEMMMSTPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAHRMIVERRK 60
           MHAAITPRLHEMMMSTPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAHRMIVERRK
Sbjct: 1   MHAAITPRLHEMMMSTPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAHRMIVERRK 60

Query: 61  WLTDPEFVELLGLCQFLPGGNIINLSVALGMKFRGWKGALAGITGLIAVPSIVVILLGMI 120
           WLTDPEFVELLGLCQFLPGGNIINLSVALGMKFRGWKGALAG+TGLIAVPS+VVILLGMI
Sbjct: 61  WLTDPEFVELLGLCQFLPGGNIINLSVALGMKFRGWKGALAGVTGLIAVPSMVVILLGMI 120

Query: 121 YQHFQHDPNVKHLFAGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPL 180
           YQHFQHDPNVKHLFAGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPL
Sbjct: 121 YQHFQHDPNVKHLFAGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPL 180

Query: 181 LWVMLVMTPISVVLTARYGERFAAKPQSVPVQDEGKKEGAQ 221
           LWVMLVMTPISVVLTARYGERFAAKPQSVPVQDEGKKEGAQ
Sbjct: 181 LWVMLVMTPISVVLTARYGERFAAKPQSVPVQDEGKKEGAQ 221


>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 60.8 bits (146), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 9/101 (8%)

Query: 31  ELFLGFLGLGMTAFGGALPLAH-----RMIVERRKWLTDPEFVELLGLCQFLPGGNIINL 85
           E+FL FL LG+T+FGG  P AH        V RR WL++  + +L+ +CQFLPG +   +
Sbjct: 94  EVFLVFLRLGLTSFGG--PAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQV 151

Query: 86  SVALGMKFRGWKGALAGITGLIAVPSIVVILLGMIYQHFQH 126
            +A+G+   G+ GALA   G   +PS  ++L+G+     Q 
Sbjct: 152 GMAIGVLRAGYGGALAAWLGFT-LPS-ALLLMGLALSVLQQ 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 717,921
Number of extensions: 29763
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)