BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0035.p (499 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 1020 0.0 gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 470 e-133 gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 344 8e-96 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/499 (100%), Positives = 499/499 (100%) Query: 1 LLALALPQAALAFDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSY 60 LLALALPQAALAFDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSY Sbjct: 43 LLALALPQAALAFDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSY 102 Query: 61 WRAQKLPFELSFIHLGASYTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLG 120 WRAQKLPFELSFIHLGASYTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLG Sbjct: 103 WRAQKLPFELSFIHLGASYTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLG 162 Query: 121 FAGFRVRFPVNSAKVKDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFT 180 FAGFRVRFPVNSAKVKDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFT Sbjct: 163 FAGFRVRFPVNSAKVKDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFT 222 Query: 181 EFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAP 240 EFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAP Sbjct: 223 EFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAP 282 Query: 241 LTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLG 300 LTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLG Sbjct: 283 LTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLG 342 Query: 301 FGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIP 360 FGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIP Sbjct: 343 FGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIP 402 Query: 361 NTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSIDFDG 420 NTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSIDFDG Sbjct: 403 NTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSIDFDG 462 Query: 421 GNLKKLPANARVEGVVEADANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLR 480 GNLKKLPANARVEGVVEADANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLR Sbjct: 463 GNLKKLPANARVEGVVEADANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLR 522 Query: 481 NANGGTTLSETWSYILPPN 499 NANGGTTLSETWSYILPPN Sbjct: 523 NANGGTTLSETWSYILPPN 541 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust. Identities = 241/502 (48%), Positives = 319/502 (63%), Gaps = 7/502 (1%) Query: 1 LLALALPQAALAFDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSY 60 L A A Q + FD N ARAK LA K Y+KP L + + + +I + +K Sbjct: 11 LAASAQAQTSQGFDLNQAVARAKDLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKSEKFE 70 Query: 61 WRAQKLPFELSFIHLGASYTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLG 120 WR QK PF+L+F H G + P+ ++E++ V+++ ++ F++ ++ S +LG Sbjct: 71 WRDQKTPFKLAFYHQGMQFNAPVAIHEIIDGRVQDVGYSTDRFNF-GDLNLAKDSTAHLG 129 Query: 121 FAGFRVRFPVNSAKVKDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFT 180 +AGFRV +P+N +D+V++ GASYFR +GKGQ YGLSARGLAIDTA+ SGEEFP FT Sbjct: 130 YAGFRVVYPINRDDKEDEVMSVLGASYFRVIGKGQVYGLSARGLAIDTAMMSGEEFPHFT 189 Query: 181 EFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAP 240 EFW++RP+ K+L YALLDSPRATGAY+F L PG D ++DV+A+++LR V +LGIAP Sbjct: 190 EFWIQRPAPGEKQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVGRLGIAP 249 Query: 241 LTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLG 300 LTSMFLFG NQ +FRP +HDS+GLA+ +G GEWLWRPL +P+ + V+SF NP G Sbjct: 250 LTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWRPLNDPQNVEVSSFEVSNPRG 309 Query: 301 FGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIP 360 FGL+QR R FS YEDL Y RPSAW+EPKG WG G V+LV+IPT DETNDNIVAYW+P Sbjct: 310 FGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQLVEIPTADETNDNIVAYWLP 369 Query: 361 NTLPKPGQPFNVEYRLSWQKDNEK--RPPLAYVTQTLFGHGYRPKQE--GKTDDVQQLSI 416 LP G P +YR+ W D + +V QT G + D L + Sbjct: 370 AQLPARGTPLAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTTALLV 429 Query: 417 DFDGGNLKKLPANARVEGVVEADANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELR 476 DF GG L LPA V+ V NG+L V + N A GWR+ ++++ + VELR Sbjct: 430 DFTGGPLGALPAGTPVQPQVSVSNNGELIDVQLQPNPAINGWRLTLRVKIRNVAQAVELR 489 Query: 477 GFLRNANGGTTLSETWSYILPP 498 L +AN G L+ETWSY LPP Sbjct: 490 AAL-SAN-GKPLTETWSYQLPP 509 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 344 bits (883), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 208/504 (41%), Positives = 285/504 (56%), Gaps = 28/504 (5%) Query: 13 FDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSF 72 F F + RA+ +A Y+ A L + Y+ +I F+ D++ + PF L+F Sbjct: 44 FSFAQLIERARQMASTPYQPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTF 103 Query: 73 IHLGASYTEPIKVN--EVVGDAV-----REIHFNPALFDYSA---TRSVDPRSLRNLGFA 122 HLG + P+++ E GDA RE+ + FD A ++ P S GFA Sbjct: 104 FHLGKFFRVPVRMFLLEGAGDATAPTQARELRYRDDYFDMPADSPAHALPPGS----GFA 159 Query: 123 GFRVRFP-VNSAKVKD----DVLTFHGASYFRALGKGQSYGLSARGLAIDTALYS-GEEF 176 GFR + + +VKD D + F GASYFRA+G YGLSARG+AID A+ EEF Sbjct: 160 GFRFQESRLGDQQVKDWRKNDWVAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEF 219 Query: 177 PRFTEFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKL 236 P FT+F+ E + S +V+YALLD P TGAYRF ++ G M++ QL+LR +V +L Sbjct: 220 PDFTQFFFEPGAPGSDTVVVYALLDGPSITGAYRFAMQRGQGVTMEIDKQLFLRRDVERL 279 Query: 237 GIAPLTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFD 296 G+AP TSM+ + E G D+RPEVHDSDGLA+ +G GE LWRPL NP R + +SF+ Sbjct: 280 GLAPATSMYWYSETVKGTGVDWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADR 339 Query: 297 NPLGFGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVA 356 P GFGLMQRDR F HY D +Y+ RPS WVEP G WG G+V+L+++ T DE +DNIVA Sbjct: 340 QPRGFGLMQRDRDFDHYLD-GVHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVA 398 Query: 357 YWIPNTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSI 416 W+P + G + + YRL WQ + LA T G G +P Q + V++ + Sbjct: 399 MWVPKAAARAGDRYQLRYRLHWQSETPFPSALARCVATRLGRGGQPGQP-RPPQVRKFMV 457 Query: 417 DFDGGNLKKLPANARVEGVVEADANGKLASVTTRK--NEATGGWRVEVKLRRTEENKPVE 474 +F G L+ LP + E V+ A + G ++ V T N G WR + L E +PVE Sbjct: 458 EFKGPPLQALPFGVKPEAVISA-SRGSISYVYTEALPNGVPGHWRAQFDL-TAEGEEPVE 515 Query: 475 LRGFLRNANGGTTLSETWSYILPP 498 LR FLR+ G LSETW + P Sbjct: 516 LRLFLRHQ--GQALSETWLFQYHP 537 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,658,888 Number of extensions: 72932 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 3 Length of query: 499 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 410 Effective length of database: 1,198,455 Effective search space: 491366550 Effective search space used: 491366550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)