BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0023.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 746 0.0 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 280 2e-76 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 135 4e-33 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/372 (99%), Positives = 371/372 (99%) Query: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 Query: 121 VPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGA 180 VPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGA Sbjct: 121 VPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGA 180 Query: 181 HGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG 240 HGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG Sbjct: 181 HGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG 240 Query: 241 GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAV 300 GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAV Sbjct: 241 GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAV 300 Query: 301 GMITDAIQAEHILRTGQADLVLLARELQRDPYWPLHAAQQLREEVAWPPQYVRAASSKTP 360 GMITDAIQAEHILRTGQADLVLLAREL RDPYWPLHAAQQLREEVAWPPQYVRAASSKTP Sbjct: 301 GMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQLREEVAWPPQYVRAASSKTP 360 Query: 361 LRPEVQYGLKEQ 372 LRPEVQYGLKEQ Sbjct: 361 LRPEVQYGLKEQ 372 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 280 bits (715), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/343 (46%), Positives = 209/343 (60%), Gaps = 6/343 (1%) Query: 3 SHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVV 62 S LF P L+ V+L NRIAV PMCQY A +G VNDWHL H S A GGAGLV++EATAV Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVS 61 Query: 63 AEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGSVP 122 EGRI+ GIW D + + I+ GAVPGIQ+ HAGRK+S RPW+G Sbjct: 62 PEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAA 121 Query: 123 PSAGGWTPQAPSALPFDDGY-STPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGAH 181 A GW +PSA+ + G P+AMS++ I + Q F +AA RA AGF+ +ELH AH Sbjct: 122 DDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAH 181 Query: 182 GYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG- 240 GYLG F S +NQR D YGGS ENR RFLLE RA R VWPE L L VR ++ DG Sbjct: 182 GYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEY-DGR 240 Query: 241 -GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGI-ASG 298 T E++ + ++ ++ G+D++ V+ G P+ IP GP + A RV+ EA + S Sbjct: 241 DEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSS 300 Query: 299 AVGMITDAIQAEHILRTGQADLVLLARELQRDPYWPLHAAQQL 341 A G T A+ AE ++ GQ DLV++ R +P+W AA++L Sbjct: 301 AWGFGTPAL-AEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKEL 342 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/275 (36%), Positives = 153/275 (55%), Gaps = 14/275 (5%) Query: 2 SSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFV-NDWHLVHLGSRAVGGAGLVLMEATA 60 +S LF P+ L V L NRI ++P+ + A+ G V +D + RA GAGL++ EAT Sbjct: 7 NSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQ 64 Query: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSS-ILRPWDGPAG 119 + EG+ + GI+ D H+A ++IT + +G +QL H GR S L+P G A Sbjct: 65 ISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQP--GHAL 122 Query: 120 SVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHG 179 V PSA QA + F + TP+A+ ++ A+V+ + AAQ ++ AGF +E+H Sbjct: 123 PVAPSAVQPEGQAFTESGFKP-FVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIHA 181 Query: 180 AHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLS----AT 235 A+GYL QFL +NQR+D YGGS ENR R LLE+ +A +V P E + +RLS A Sbjct: 182 ANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSER-VGIRLSPISPAN 240 Query: 236 DWVDGGWTPEETVTLSQ--RLRELGVDLVDVSSGG 268 D D + + Q R + + + +V+ ++GG Sbjct: 241 DIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGG 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,164,174 Number of extensions: 48111 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 3 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)