BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0022.p (614 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 1215 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 298 8e-82 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 292 5e-80 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 291 1e-79 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 277 2e-75 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1215 bits (3143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 611/614 (99%), Positives = 612/614 (99%) Query: 1 MSSTPSSSPLPAQAGHPADDHAADSPTARKSALAALRGLLPFLAPYKKQFLLAGLALVVG 60 MSSTPSSSPLPAQAGHPADDHAADSPTARKSALAALRGLLPFLAPYKKQFLLAGLALVV Sbjct: 1 MSSTPSSSPLPAQAGHPADDHAADSPTARKSALAALRGLLPFLAPYKKQFLLAGLALVVA 60 Query: 61 APATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGE 120 A ATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGE Sbjct: 61 AAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGE 120 Query: 121 RVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFI 180 RVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFI Sbjct: 121 RVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFI 180 Query: 181 GGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAM 240 GGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAM Sbjct: 181 GGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAM 240 Query: 241 PTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAV 300 PTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAV Sbjct: 241 PTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAV 300 Query: 301 MEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLP 360 MEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLP Sbjct: 301 MEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLP 360 Query: 361 EKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQL 420 EKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQL Sbjct: 361 EKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQL 420 Query: 421 LLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPDASDAE 480 LLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRP+ASDAE Sbjct: 421 LLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAE 480 Query: 481 VIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATS 540 VIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATS Sbjct: 481 VIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATS 540 Query: 541 ALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARD 600 ALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARD Sbjct: 541 ALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARD 600 Query: 601 GLYAGLAALQFQTQ 614 GLYAGLAALQFQTQ Sbjct: 601 GLYAGLAALQFQTQ 614 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 298 bits (763), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 217/607 (35%), Positives = 318/607 (52%), Gaps = 33/607 (5%) Query: 16 HPADDHAADSPTARKSA-LAALRGLLPFLAPYKKQFLLAGLALVVGAP-ATLAVPYAFKQ 73 +P + +P R+ +R LLP+L YK + LLA LA +VGA A + VP K+ Sbjct: 4 YPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLA-LAFLVGAKLANVGVPLVLKR 62 Query: 74 MID-LGFGAAGSKSASHINLYFLALFGVACILGVA--TALRFYMVSWLGERVTADLRSAV 130 ++D + ++ + L L +G A L A T LR M + + +R + V Sbjct: 63 LVDAMTITPTHPQALLVLPLGLLVAYG-ALRLATALFTELRELMFARVTQRAVRTIALQV 121 Query: 131 YAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVG--------TSISMALRNALLFIGG 182 + H+ S F +TG + + T + +LV T I +AL A L Sbjct: 122 FRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITHY 181 Query: 183 MSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPT 242 +A I+ V + R + +L + R D+ +LN T Sbjct: 182 DVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDS------LLN-YET 234 Query: 243 VQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVME 302 V+ F +EE EARR+ + ++R A++ + SLL ++ A+ +LW V++ Sbjct: 235 VKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVID 294 Query: 303 GSMSGGEL---GQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLL 359 GSM+ G++ F++ + LG L + +++ ERL LL H V Sbjct: 295 GSMTLGDMVLVNAFMIQLYIPLNFLGVLYR---EIKQSLADMERLFSLLEEHREVAD--- 348 Query: 360 PEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQ 419 P GA L VDF Y L + TVQ G T A+VG SG+GK+TL + Sbjct: 349 SADAKPLKTQGANLHFDHVDFSYER--NRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSR 406 Query: 420 LLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPDASDA 479 LL RFYD G I +DG D+R + +LR AIGIVPQDTV+F+ NI +G+P A+ Sbjct: 407 LLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATRE 466 Query: 480 EVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEAT 539 +++AAA+ A H+FIE LP YA +GERG++LSGG++QR+AIAR LLK+P +L+ DEAT Sbjct: 467 QIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEAT 526 Query: 540 SALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVAR 599 SALD+ +E+ +Q LE RTTLVIAHRL+T+ A +I+VL+HGRIVE GTHA L+ Sbjct: 527 SALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMA 586 Query: 600 DGLYAGL 606 GLYA + Sbjct: 587 GGLYAQM 593 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 292 bits (748), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 210/572 (36%), Positives = 311/572 (54%), Gaps = 13/572 (2%) Query: 45 PYKKQFLLAGLALVVGAPATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACIL 104 PYKK+ +A +A++V A VPY F+ ++D GF K A + L +A+ G+ I Sbjct: 15 PYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVG---KPAFSLWLVPVAVIGIFFIR 71 Query: 105 GVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTL 164 G+AT YM++W+ R+ +LR ++A ++ F+ T G+V++ + + I + Sbjct: 72 GIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDM 131 Query: 165 VGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQD 224 V + LR+AL +G ++ L + + LT + +V+L V L + G+R++KL+R S Sbjct: 132 VTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLA 191 Query: 225 RVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILL 284 A+ + + E A ++ F ++ E RF + E M A S + L+ Sbjct: 192 VNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLM 251 Query: 285 VFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERL 344 A+ V+ + G ++ G FI ++ L L+E+ G QR A E + Sbjct: 252 TATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEV 311 Query: 345 LDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHP--SLTQLSLTVQPGE 402 L+ + E L R A G V+ V F YP GH +L ++L V+ GE Sbjct: 312 YKLI---DKTTERITGEALAGR-ATGQLDFVE-VGFAYP---GHEQLALKNINLHVEAGE 363 Query: 403 TVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFS 462 T+A VG SG GK+TL L+ FY G+I LDG DI + L +LR I +V Q+TV+F Sbjct: 364 TIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFD 423 Query: 463 ANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAI 522 NI +G + A V AA + A + + LP LG+ G RLSGGQRQR+AI Sbjct: 424 DTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAI 483 Query: 523 ARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVL 582 ARA+ K+ P+L+LDEATSALD ESER VQ AL+ M GRTT VIAHRL+T++RADRI+VL Sbjct: 484 ARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVL 543 Query: 583 EHGRIVESGTHAELVARDGLYAGLAALQFQTQ 614 HG+I E GTH L+ ++G+YA L LQF Q Sbjct: 544 AHGQIAEIGTHQALLEQEGVYANLYRLQFSQQ 575 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 291 bits (744), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 204/588 (34%), Positives = 315/588 (53%), Gaps = 27/588 (4%) Query: 35 ALRGLLPFLAPYKKQFLLAGLALVVGAPATLAVPYAFKQMID---LGFGAAGSKSASHIN 91 AL L F PYK LL L + ATL PY ++D + F Sbjct: 167 ALFRLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLAT 226 Query: 92 LYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVL 151 LY L G A + R Y+++ + ER+ ADLR+ Y+H++ S E+F +TG+++ Sbjct: 227 LYLSGLLGAAVLAWGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLM 286 Query: 152 SRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLPIVFY 211 +R+ ++T I + + L F + M+ T+A L SI + +LP+ F Sbjct: 287 ARIGSETDRICVFLSLHL-------LDFAIDVLMIIMTAAILISINPWLALVTLLPLPFI 339 Query: 212 GRRVR----KLSRASQ--DRV-ADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAF 264 + +L + DR+ ++ + + + + + V+AF E+ E RF ++ Sbjct: 340 AWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNL 399 Query: 265 GTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSL 324 + SL T L ++ V G V ++ G L F+ Y S L Sbjct: 400 MVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRL 459 Query: 325 GALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANG--AALTVQGVDFHY 382 ++S ++ TQ+AA +R+ D+L S V PE P A+ V+ + F Y Sbjct: 460 DSMSRIVSVTQKAAAGAKRIFDILDHVSSV-----PEPANPVHLEKVQGAIEVRNIGFRY 514 Query: 383 PSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYL 442 +R + +SL++ PGE + +VG SG+GK+T+ L+ RFYD +G I +DGVDIR L Sbjct: 515 GNRA---VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSL 571 Query: 443 DLQALRGAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPGSYA 502 + R IG+V Q+ +F ENI +G+P+A+ E+IAAA+ A AHEFI RLP Y Sbjct: 572 PISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYD 631 Query: 503 CFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRT 562 +GERG LSGG+RQRI+IARALL +P +L+LDEATS++D +E+ +Q AL+ + GRT Sbjct: 632 SLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRT 691 Query: 563 TLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQ 610 T+ IAHRL+T+++ADR++VL+ G++VE G H EL+AR+G Y L Q Sbjct: 692 TIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQ 739 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 277 bits (709), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 200/597 (33%), Positives = 319/597 (53%), Gaps = 37/597 (6%) Query: 28 ARKSALAALRGLLPFLAPYKK---QFLLAGLAL-VVGAPATLAVPYAFKQMIDLGFGAAG 83 A++S+ +P + Y+K + LL L L ++G L P F+ ++D Sbjct: 141 AQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIG----LITPMFFQVVMD---KVLV 193 Query: 84 SKSASHINLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFE 143 + + +N+ + L V T +R + + ++ +L S +++H+++ +F+ Sbjct: 194 NHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQ 253 Query: 144 TTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAA 203 + G+ ++R+ + L G ++++ L F+ ML++ S L+ I++ + Sbjct: 254 VRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWY-SVSLSLIVLASIPV 312 Query: 204 VVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERA 263 VL + + +R+ ++ A+ + E L M TV+A E R+ Q ++ Sbjct: 313 YVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEP----RWQQKWDKQ 368 Query: 264 FGTAMERVRARSLLTVVAILLVFGAI--------VFVLWLGAHAVMEGSMSGGELGQFIL 315 + A L T LL GA+ V ++WLGA V++ MS GEL F + Sbjct: 369 LAAYV----AAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNM 424 Query: 316 YASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTV 375 A VA + L+++ D Q+ + RL D+L A + V +LP NGA ++ Sbjct: 425 LAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGN--RTRLP--RVNGA-ISF 479 Query: 376 QGVDFHYPSRPGHPSLTQ-LSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILL 434 V F Y RP P + + LSL ++PGE + IVG SG+GK+TL +L+ R Y + G+I + Sbjct: 480 DLVSFRY--RPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISV 537 Query: 435 DGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFI 494 DG DI +D +LR IG+V Q+ +FS + +NI P ++I AA++A AH+FI Sbjct: 538 DGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFI 597 Query: 495 ERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGAL 554 LP Y +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + Sbjct: 598 CELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNM 657 Query: 555 EAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVAR-DGLYAGLAALQ 610 GRT L+IAHRL+ V+ ADRIIV+E GR+ ESG+H EL+ G+YA L LQ Sbjct: 658 RQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,730,413 Number of extensions: 67894 Number of successful extensions: 725 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 575 Number of HSP's successfully gapped: 135 Length of query: 614 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 523 Effective length of database: 1,188,985 Effective search space: 621839155 Effective search space used: 621839155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)