BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0016.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...   260   4e-71
gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...    56   1e-09

>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  260 bits (664), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV 60
           MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV
Sbjct: 1   MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV 60

Query: 61  IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM 120
           IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM
Sbjct: 61  IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM 120

Query: 121 PGSRRQRPPG 130
           PGSRRQRPPG
Sbjct: 121 PGSRRQRPPG 130


>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 6   DLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFVIANVF 65
           D+I C  C  V+Q    G+R    C  CHA L       L     L I A I+++ AN+ 
Sbjct: 32  DVIGCHHCGTVWQDAQAGER----CGVCHAPLHVRKIDSLTRTWALLIAACIMYIPANLM 87

Query: 66  PI-VTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLMPGSR 124
           P+ VT  L     DT L G V+     G   +AL+V   + L P+ +L  L  L+    R
Sbjct: 88  PVMVTRTLFDEQRDTILSG-VIYFWTSGEWGLALVVFVASFLVPLFKLVALGILVFSARR 146

Query: 125 RQR 127
           R R
Sbjct: 147 RSR 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 337,554
Number of extensions: 11223
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)