BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0015.p
         (427 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...   467   e-133
gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...   234   1e-62

>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  467 bits (1202), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/236 (97%), Positives = 232/236 (98%), Gaps = 4/236 (1%)

Query: 196 VSRPASTSA----GLAEDGAQDLPVQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLH 251
           +SRPASTSA    GLAEDGAQDLPVQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLH
Sbjct: 1   MSRPASTSAATSAGLAEDGAQDLPVQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLH 60

Query: 252 VRKIDSLTRTWALLIAACIMYIPANLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLAL 311
           VRKIDSLTRTWALLIAACIMYIPANLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLAL
Sbjct: 61  VRKIDSLTRTWALLIAACIMYIPANLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLAL 120

Query: 312 VVFVASFLVPLFKLVALGILVFSARRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLT 371
           VVFVASFLVPLFKLVALGILVFSARRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLT
Sbjct: 121 VVFVASFLVPLFKLVALGILVFSARRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLT 180

Query: 372 GLVKIHGFANIHAGIGIAAFGAVVVLTMLASLAFDPRLIWDDADPTPPANKKQEPA 427
           GLVKIHGFANIHAGIGIAAFGAVVVLTMLASLAFDPRLIWDDADPTPPANKKQEPA
Sbjct: 181 GLVKIHGFANIHAGIGIAAFGAVVVLTMLASLAFDPRLIWDDADPTPPANKKQEPA 236


>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  234 bits (597), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV 60
           MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV
Sbjct: 1   MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV 60

Query: 61  IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM 120
           IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM
Sbjct: 61  IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM 120

Query: 121 PGSRRQRP 128
           PGSRRQRP
Sbjct: 121 PGSRRQRP 128



 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 223 DVIGCHHCGTVWQDAQAGER----CGVCHAPLHVRKIDSLTRTWALLIAACIMYIPANLM 278
           D+I C  C  V+Q    G+R    C  CHA L       L     L I A I+++ AN+ 
Sbjct: 6   DLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFVIANVF 65

Query: 279 PVMVTRTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKLVALGILVFSARRR 338
           P+ VT  L     DT L G +   T    G++ V  +      LF ++ L +L++     
Sbjct: 66  PI-VTIELQGLSADTTLMGAVVALTRD--GMSEVALLVLATTLLFPMIQLFVLLYLLMPG 122

Query: 339 SRWQRLQ-RAKLYRLVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAGIGIAAFGAVVVL 397
           SR QR      L RL++    W M++VF++ +L  L+K+   A +  G  + +FG + VL
Sbjct: 123 SRRQRPPGFVLLLRLMQVARPWGMIEVFMLGILVALIKLSNIAEVIPGPALWSFGGLTVL 182

Query: 398 TMLASLAFDPRLIW 411
            +   ++F+PR +W
Sbjct: 183 -LTVVVSFNPRYLW 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,228,071
Number of extensions: 48044
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,203,190
Effective search space: 407881410
Effective search space used: 407881410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)