BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0006.p (529 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 1058 0.0 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 439 e-124 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 291 6e-80 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 241 1e-64 gi|300310863|ref|YP_003774955.1| ABC transporter containing dupl... 226 4e-60 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/529 (99%), Positives = 527/529 (99%) Query: 1 MSAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY 60 MSAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY Sbjct: 1 MSAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY 60 Query: 61 EGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNA 120 EGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNA Sbjct: 61 EGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNA 120 Query: 121 RDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTAL 180 RDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTAL Sbjct: 121 RDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTAL 180 Query: 181 DVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFAN 240 DVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFAN Sbjct: 181 DVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFAN 240 Query: 241 PQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQL 300 PQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQL Sbjct: 241 PQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQL 300 Query: 301 RRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVV 360 RRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVV Sbjct: 301 RRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVV 360 Query: 361 FQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFS 420 FQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFS Sbjct: 361 FQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFS 420 Query: 421 GGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLA 480 GGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLA Sbjct: 421 GGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLA 480 Query: 481 VVQAMAHQVIVMKDGKVVESGPTAQVLQQPQQEYTRRLVVAATYAEAAP 529 VVQAMAHQVIVMKDGKVVESG TAQVLQQPQQEYTRRLV AATYAEAAP Sbjct: 481 VVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLVAAATYAEAAP 529 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/566 (45%), Positives = 352/566 (62%), Gaps = 48/566 (8%) Query: 5 LLEVNNLTVRFGDTV-VVDRV---SFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY 60 +L+VN+L+VRF + VD V SF + GE A+VGESGSGK+VSSLA+M+L + Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 61 E---GSILL---DGQ--DVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVL 112 + GS+ GQ D+ M+ +RG ++AMIFQEPMT+LNP+FT+G QIAE + Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 Query: 113 MHHEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLI 172 H+GL A A+ +LE IPE R +PH+LSGG RQR MIAMAL+CKP LLI Sbjct: 127 RLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 Query: 173 ADEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESA 232 ADEPTTALDVTIQ QIL L+ LQ+E M V+ I+HD+ +V ADRV VM +G+ VE Sbjct: 187 ADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 Query: 233 SVAELFANPQQPYTRKLL------------------------QSRPQRNAADVAADAPV- 267 +V LFA P PYT+ LL ++RP A+++ A A + Sbjct: 247 AVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPDLIASELQAQAEIA 306 Query: 268 -----VLQAERLRCTYHIKQGWFA--KRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLG 320 +L+ L + +K G F ++ HAV+ V L GETL IVGESG GKST G Sbjct: 307 AQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTG 366 Query: 321 MALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGE 380 +LLRL + G + F G +++ P+ ELR LR +Q +FQDPFASL PR TV + E Sbjct: 367 RSLLRLVDIA-GGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIME 425 Query: 381 GLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELL 440 + +H A+++ A+ L VGL+ +RYPHEFSGGQRQRI IARAL L P+++ Sbjct: 426 PMLVHGMKEGAQERVDAL---LTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIV 482 Query: 441 LLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVES 500 + DE SALDV++Q Q++ L+ +LQ G++++FI+HD+AVV+ ++H+V VM G++VE Sbjct: 483 IADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEI 542 Query: 501 GPTAQVLQQPQQEYTRRLVVAATYAE 526 GP + + PQ YTR+L+ A A+ Sbjct: 543 GPRRAIFENPQHPYTRKLMAAVPVAD 568 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 291 bits (746), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 182/512 (35%), Positives = 289/512 (56%), Gaps = 15/512 (2%) Query: 20 VVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY--EGSILLDGQDVLAKSER 77 +V V+F +A GE AL+GESGSGKT +L+++ + + G + + + + E+ Sbjct: 48 IVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDEK 107 Query: 78 QMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTGIP 137 + +RG+ VA I Q A NP T+ +Q+ E + H ++ A R+AV L +P Sbjct: 108 ALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALP 167 Query: 138 EPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQLQR 197 P + YPH++SGGQ QR M AMAL P+L+I DEPTTALDVT Q+++L + + Sbjct: 168 NPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVVK 227 Query: 198 EENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLL-QSRPQR 256 E + +SHDL +V ADR+ V+ G + E+ S +++ P YT+ LL + P Sbjct: 228 ELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQVLHAPADSYTQCLLAAASPAA 287 Query: 257 NAADVAADAPVVLQAER----LRCTYHIKQGWFAKR-----AFHAVDGVDLQLRRGETLG 307 + P L AE LR + + G+ A +D ++L ++RG T+G Sbjct: 288 RVVQLREILPATLPAEARAPLLRISGLVA-GYGAPDRLGLPGVRILDDINLTIQRGSTVG 346 Query: 308 IVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFAS 367 I+GESGSGK+TL A+ + A + GSI+ DG +S + R R+Q+VFQ+ + Sbjct: 347 IIGESGSGKTTLARAVAGMIAPA-RGSIQLDGETLSPTLEGRTREQFRRVQIVFQNADTA 405 Query: 368 LSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRI 427 L+P ++ +I+ L +H E R+ L+ V L A V++R P E SGGQ+QR+ Sbjct: 406 LNPSHSIGRILNRPLSFYH-GLKGEAMRRRTAELLDLVQLPATVIDRLPAELSGGQKQRV 464 Query: 428 AIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAH 487 +ARAL +P+L+L DE TSALD V +L+LLAEL+R ++Y+FI+HD++ V+A+ Sbjct: 465 NLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRRELQVSYMFISHDISTVRAICD 524 Query: 488 QVIVMKDGKVVESGPTAQVLQQPQQEYTRRLV 519 ++V+ G++V + P ++ P Y+ L+ Sbjct: 525 DIVVLYAGRMVANRPREAMMAPPYHPYSHLLL 556 Score = 142 bits (357), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 15/261 (5%) Query: 3 AALLEVNNLTVRFG--------DTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL 54 A LL ++ L +G ++D ++ I G ++GESGSGKT + AV + Sbjct: 306 APLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGM 365 Query: 55 NQDARYEGSILLDGQDVLAKSE-RQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLM 113 AR GSI LDG+ + E R +Q R V ++FQ TALNP +IG + L Sbjct: 366 IAPAR--GSIQLDGETLSPTLEGRTREQFR--RVQIVFQNADTALNPSHSIGRILNRPLS 421 Query: 114 HHEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIA 173 + GL RR LL+ +P L P ELSGGQ+QR +A ALA KP L++ Sbjct: 422 FYHGLKGEAMRRRTAELLDLVQLPATVIDRL--PAELSGGQKQRVNLARALAAKPDLILC 479 Query: 174 DEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESAS 233 DE T+ALD + IL LL +L+RE ++ + ISHD++ VR D + V+ G++V + Sbjct: 480 DEVTSALDTVVAAAILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRP 539 Query: 234 VAELFANPQQPYTRKLLQSRP 254 + A P PY+ LL S P Sbjct: 540 REAMMAPPYHPYSHLLLSSVP 560 Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 141/238 (59%), Gaps = 5/238 (2%) Query: 293 VDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASV---AGSIRFDGVPISERPQRE 349 V V+ + RGE L ++GESGSGK+T+ ++LL + A G +R I + ++ Sbjct: 49 VKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDEKA 108 Query: 350 LRPLRSR-MQVVFQDPFASLSPRRTV-EQIVGEGLELHHPDRSAEQQRQAIVAALEEVGL 407 L +R + + Q A+ +P RT+ +Q++ L+ D+++ ++ + + Sbjct: 109 LLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALALPN 168 Query: 408 SAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRR 467 + ERYPH+ SGGQ QR+ A ALV PEL++LDEPT+ALDVT Q +VL+ + + Sbjct: 169 PDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVVKE 228 Query: 468 HGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGPTAQVLQQPQQEYTRRLVVAATYA 525 G ++++HDLAVV MA ++IV++DG V E+G T+QVL P YT+ L+ AA+ A Sbjct: 229 LGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQVLHAPADSYTQCLLAAASPA 286 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 241 bits (615), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 128/261 (49%), Positives = 171/261 (65%), Gaps = 6/261 (2%) Query: 3 AALLEVNNLTVRF----GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL-NQD 57 + LL+V NL V G V + F + GE LVGESG GK+++SLA+M L + Sbjct: 2 SVLLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRK 61 Query: 58 ARYEGS-ILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHE 116 A+ IL DG D+ ++Q+ Q+RG +AMIFQEPMT+LNP +T+GNQ+ E ++ Sbjct: 62 AQCSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQP 121 Query: 117 GLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEP 176 G++ +A RA+ LL +TGI R YPH+LSGG RQR MIAM+L C P L+IADEP Sbjct: 122 GVSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEP 181 Query: 177 TTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAE 236 TTALDVTIQ QIL ++ +LQ+E AV+ I+HDL +V ADRV VM G++VE+ VA+ Sbjct: 182 TTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQ 241 Query: 237 LFANPQQPYTRKLLQSRPQRN 257 LFA P+ PYT+ LL P R Sbjct: 242 LFAQPRHPYTQGLLNCIPVRG 262 Score = 189 bits (480), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 149/236 (63%), Gaps = 7/236 (2%) Query: 290 FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL---SAASVAGSIRFDGVPISERP 346 HAV G+D Q+RRGE L +VGESG GKS +AL+ L A A I FDGV + P Sbjct: 21 LHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGVDLHGMP 80 Query: 347 QRELRPLRS-RMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEV 405 ++L LR RM ++FQ+P SL+P T+ + E + L P S + R+ + L Sbjct: 81 DKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAM-LQQPGVSRAEARERALYLLHRT 139 Query: 406 GLSAAV--LERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAE 463 G+S A L +YPH+ SGG RQR+ IA +L+ P+L++ DEPT+ALDVT+Q Q+L+++ E Sbjct: 140 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTTALDVTIQAQILRMIRE 199 Query: 464 LQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGPTAQVLQQPQQEYTRRLV 519 LQ+ G A +FITHDL VV +A +V VM G+VVE+ AQ+ QP+ YT+ L+ Sbjct: 200 LQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTQGLL 255 >gi|300310863|ref|YP_003774955.1| ABC transporter containing duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 493 Score = 226 bits (576), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 174/517 (33%), Positives = 260/517 (50%), Gaps = 55/517 (10%) Query: 6 LEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVM-QLNQDARYEGSI 64 L V +LTV G +V VSFA+ G +L+GESGSGK++ + A+M L R GSI Sbjct: 10 LRVEDLTVWHGQQPLVGGVSFAVPVGGVLSLLGESGSGKSLLAQAIMGNLPASLRATGSI 69 Query: 65 LLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEV--LMHHEGLNARD 122 L GQ A R Q G +A++ QEP AL+P T+ Q+AE L+ + ++ Sbjct: 70 SLAGQYSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSQSAPDQQN 129 Query: 123 AARRAVALLEKT---------GIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIA 173 + R G+ A + YP +SGG QR A L+I Sbjct: 130 ESLRRARSQAAASARRALASLGLEAAADK---YPFMISGGMAQRVAFLATHAAGAPLMII 186 Query: 174 DEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESAS 233 DEPT LDV + ++LALL Q + E +++L I+HD+ L R ++ V++ G +VE S Sbjct: 187 DEPTKGLDVDRRGEVLALL-QAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAMVEQGS 245 Query: 234 VAELFANPQQPYTRKLLQSRPQ----RNAADVAADAPVVLQAERLRCTYHIKQGWFAKRA 289 L A P+ YTR+LL + P ADA V+ + + + F ++A Sbjct: 246 AEALLAQPRHAYTRRLLGADPACWPLPEVRTPRADAAVIAELREISKS-------FGEQA 298 Query: 290 FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRE 349 A GV +L GE + + G SGSGK++LG LL L +R G+P Sbjct: 299 LFA--GVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLP-------- 348 Query: 350 LRPLRSRMQVVFQDPFASLSP----RRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEV 405 R+ Q ++QDP A+ +P RR+++ +V LH Q + A LE + Sbjct: 349 ----RTAFQKIYQDPAAAFAPSIPLRRSLQDLV----RLHG------LPWQELEALLERM 394 Query: 406 GLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQ 465 ++ A+L+R P + SGG+ QRIA+AR L+++P L+ DEPTS LD QQ+V+ LL E Sbjct: 395 RIAPALLDRLPRQVSGGELQRIALARVLLMKPALIFADEPTSRLDPLTQQEVMALLVEQA 454 Query: 466 RRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGP 502 R G A L +THD +V+ +A + + + +S P Sbjct: 455 RAVGSAVLLVTHDADIVRCVADRRLTLSPAGQSQSQP 491 Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 127/251 (50%), Gaps = 17/251 (6%) Query: 284 WFAKRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASV--AGSIRFDGVP 341 W ++ V GV + G L ++GESGSGKS L A++ AS+ GSI G Sbjct: 18 WHGQQPL--VGGVSFAVPVGGVLSLLGESGSGKSLLAQAIMGNLPASLRATGSISLAGQY 75 Query: 342 ISERPQRELRP-LRSRMQVVFQDPFASLSPRRTVEQIVGEGLEL---HHPDRSAEQQRQA 397 R + R+ ++ Q+P+ +L P TV + V E EL PD+ E R+A Sbjct: 76 SDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSQSAPDQQNESLRRA 135 Query: 398 IVAALEEV-------GLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALD 450 A GL AA ++YP SGG QR+A L+++DEPT LD Sbjct: 136 RSQAAASARRALASLGLEAAA-DKYPFMISGGMAQRVAFLATHAAGAPLMIIDEPTKGLD 194 Query: 451 VTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGPTAQVLQQP 510 V + +VL LL Q G++ L ITHD+ + +A+ Q+ V++DG +VE G +L QP Sbjct: 195 VDRRGEVLALLQAAQA-EGVSLLCITHDVWLARALGGQLAVLQDGAMVEQGSAEALLAQP 253 Query: 511 QQEYTRRLVVA 521 + YTRRL+ A Sbjct: 254 RHAYTRRLLGA 264 Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 29/222 (13%) Query: 2 SAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYE 61 +A + E+ ++ FG+ + VS + GE A+ G SGSGKT SL Sbjct: 281 AAVIAELREISKSFGEQALFAGVSARLHAGEVVAVSGPSGSGKT--SL------------ 326 Query: 62 GSILLDGQDVLAKSERQMQQVRG---NDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGL 118 G+ILL +L Q+ + G I+Q+P A P + + +++ H GL Sbjct: 327 GNILL---GLLQPDSGQVLRAPGLPRTAFQKIYQDPAAAFAPSIPLRRSLQDLVRLH-GL 382 Query: 119 NARDAARRAVALLEKTGI-PEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 177 ++ ALLE+ I P R P ++SGG+ QR +A L KP L+ ADEPT Sbjct: 383 PWQELE----ALLERMRIAPALLDR---LPRQVSGGELQRIALARVLLMKPALIFADEPT 435 Query: 178 TALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADR 219 + LD Q +++ALL + R AVL+++HD ++VR ADR Sbjct: 436 SRLDPLTQQEVMALLVEQARAVGSAVLLVTHDADIVRCVADR 477 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,428,187 Number of extensions: 55146 Number of successful extensions: 999 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 621 Number of HSP's successfully gapped: 260 Length of query: 529 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 439 Effective length of database: 1,193,720 Effective search space: 524043080 Effective search space used: 524043080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)