BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0033.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313614|ref|YP_003777706.1| DNA recombination-dependent gro...   453   e-128

>gi|300313614|ref|YP_003777706.1| DNA recombination-dependent growth
           factor C protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/295 (71%), Positives = 250/295 (84%)

Query: 2   FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRPREDGMLVHQVNRQFL 61
           FKN  IYRLPAPWAI+A++L  +LAPQAFT    LDMQ  GW+ PR +  LVH VNRQ L
Sbjct: 3   FKNLQIYRLPAPWAISADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQLL 62

Query: 62  LRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRLSG 121
           ++L  EKK+LPS+VINQVT+ RA ELEEQQGFPPGRKQTKELKEQ+TDELLPRAF+ +  
Sbjct: 63  MKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVVRS 122

Query: 122 MWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASDEA 181
            W+WIDPVNGWL+ D+ +P+KAE+ LKLLFKA+PKFPLE +RTVM P AAMTDWLASDEA
Sbjct: 123 TWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASDEA 182

Query: 182 PDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFTLA 241
           P+ FTVDQDTELRSTAESKATVRYVRHTLEA  IR+HIE GKQCTRLALTWADK+SF L 
Sbjct: 183 PNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTWADKVSFVLT 242

Query: 242 DNLSIKKIALLDVLKEDVGAIGKNEDERFDGNFLLFSGEMSKLLADLIAAVGGEV 296
           +NLS+K+IA LDVLKED    GKN+DERFDG+F+L +GE++KLL  L+ A+GG++
Sbjct: 243 ENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQL 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,489
Number of extensions: 37903
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)