BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0022.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirill...   572   e-164
gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirill...    82   7e-17

>gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score =  572 bits (1474), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/282 (99%), Positives = 281/282 (99%)

Query: 1   MIPLIAPQEHWIDADDGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYFSLARLFNEAGLS 60
           MIPLIAPQEHWIDADDGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYFSLARLFNEAGLS
Sbjct: 1   MIPLIAPQEHWIDADDGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYFSLARLFNEAGLS 60

Query: 61  VRICDQRGHGNSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVPVLFGHSMGGLVAARFA 120
           VRICDQRGHGNSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVPVLFGHSMGGLVAARFA
Sbjct: 61  VRICDQRGHGNSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVPVLFGHSMGGLVAARFA 120

Query: 121 TGGYSPVRALALSSPALALDMKGWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAY 180
           TGGYSPVRALALSSPALALDMKGWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAY
Sbjct: 121 TGGYSPVRALALSSPALALDMKGWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAY 180

Query: 181 RKDPLNHGKIAPRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALP 240
           RKDPLNHGKIAPRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALP
Sbjct: 181 RKDPLNHGKIAPRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALP 240

Query: 241 SGRKTLHWYEHAYHEIFNEEASLRAQAMQDLRNWLAQLPAQP 282
           SGRKTLHWYEHAYHEIFNEEASLRAQAMQDLRNWLAQL AQP
Sbjct: 241 SGRKTLHWYEHAYHEIFNEEASLRAQAMQDLRNWLAQLSAQP 282


>gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 583

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 117/281 (41%), Gaps = 8/281 (2%)

Query: 8   QEHWIDADDGTRLFCRDWLLPGAT--AAVQMVHGLGEHGGRYFSLARLFNEAGLSVRICD 65
           QEH     D   LF R W         AV M H   EHGGR   L    +         D
Sbjct: 6   QEHQFTTHDDQTLFYRRWPATATERRGAVVMFHRGHEHGGRMAHLVDELDLPDFDFYAWD 65

Query: 66  QRGHGNSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVP---VLFGHSMGGLVAARFATG 122
            RGHG S G +G      D +RD++       ++ +       +   S+G ++ + +A  
Sbjct: 66  ARGHGRSPGPRGYSPSFADSVRDVQTFIGHLRQQWQLAEEDLAVLAQSVGAVLVSTWAHD 125

Query: 123 GYSPVRALALSSPALALDMK-GWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAYR 181
               VR L L+SPA  + +   + +  LA+   +     + + + A  ++HDP    +Y 
Sbjct: 126 YAPRVRCLVLASPAFKVKLYVPFARPGLALQQKLRGNFFVNSYVKAKYLTHDPARQASYD 185

Query: 182 KDPLNHGKIAPRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALPS 241
            DPL    I+  +L  + +A  +V  +A   T P  L ++G D  V       FFD L +
Sbjct: 186 SDPLISRPISVNILLALYEAAERVVADAQAITIPTQLLISGADWVVHHGPQHDFFDRLGT 245

Query: 242 GRKTLHWYEHAYHEIFNEEASLRAQAMQDLRNWLAQLPAQP 282
             K  H     YH+ F E+   R  A    R ++ +  AQP
Sbjct: 246 TTKEKHVLPGFYHDTFGEKD--RQIATDLAREFILRQFAQP 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 935,543
Number of extensions: 38670
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)