BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0021.p
         (464 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232...   937   0.0  

>gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232
           [Herbaspirillum seropedicae SmR1]
          Length = 483

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/464 (99%), Positives = 463/464 (99%)

Query: 1   LLLLGADFIRRNWHVLALAGLSWGAIGVSLAIDALDGVLNFPLTLFGYLLLLESLVTLWV 60
           LLLLGADFIRRNWHVLALAGLSWGAIGVSLAIDALDGVLNFPLTLFGYLLLLESLVTLWV
Sbjct: 20  LLLLGADFIRRNWHVLALAGLSWGAIGVSLAIDALDGVLNFPLTLFGYLLLLESLVTLWV 79

Query: 61  ANSGIGAQKTLRYVKGALFLLIAVLVITQHQASNMALAMLFGIAFAIGGALQITSALVVR 120
           ANSGIGAQKTLRYVKGALFLLIAVLVITQHQASNMALAMLFGIAFAIGGALQITSALVVR
Sbjct: 80  ANSGIGAQKTLRYVKGALFLLIAVLVITQHQASNMALAMLFGIAFAIGGALQITSALVVR 139

Query: 121 FPRWRTALVGGGVQILLAIFFFQPYPTHYKGTVPFCLALGLIFGGWNMIWLALRTRMLPA 180
           FPRWRTALVGGGVQILLAIFFFQPYPTHYKGTVPFCLALGLIFGGWNMIWLALRTRMLPA
Sbjct: 140 FPRWRTALVGGGVQILLAIFFFQPYPTHYKGTVPFCLALGLIFGGWNMIWLALRTRMLPA 199

Query: 181 DVSVDMLAARNSGDDRPFDAGVHRDDATLEEMRQPPATPAAAVSAAQPLTVHVWTPAGSA 240
           DVSVDMLAARNSGDDRPFDAGVHRDDATLEEMRQPPATPAAAVSAAQPLTVHVWTPAGSA
Sbjct: 200 DVSVDMLAARNSGDDRPFDAGVHRDDATLEEMRQPPATPAAAVSAAQPLTVHVWTPAGSA 259

Query: 241 RGTARRQPVIDRYIAAVDTNGVISTGHAALEIPPDLYISLYPAEEIDRSPDQFARLLRAT 300
           RG ARRQPVIDRYIAAVDTNGVISTGHAALEIPPDLYISLYPAEEIDRSPDQFARLLRAT
Sbjct: 260 RGPARRQPVIDRYIAAVDTNGVISTGHAALEIPPDLYISLYPAEEIDRSPDQFARLLRAT 319

Query: 301 ADNDVKGRYLSDYPSEAASWCESTEKIVFRDYCRARLDRFWQRYRQTEIYNLTNRNCSST 360
           ADNDVKGRYLSDYPSEAASWCESTEKIVFRDYCRARLDRFWQRYRQTEIYNLTNRNCSST
Sbjct: 320 ADNDVKGRYLSDYPSEAASWCESTEKIVFRDYCRARLDRFWQRYRQTEIYNLTNRNCSST 379

Query: 361 VANALESALEGVIGGRNRHWTNALRMIFTPEIWVASHIRKRAVTMAWTPGMVLDYARALR 420
           VANALESALEGVIGGRNRHWTNALRMIFTPEIWVASHIRKRAVTMAWTPGMVLDYARALR
Sbjct: 380 VANALESALEGVIGGRNRHWTNALRMIFTPEIWVASHIRKRAVTMAWTPGMVLDYARALR 439

Query: 421 AVVHPRPLSWAASLHLALRQSRRLRKGWRARRRYAQQHPPTGDL 464
           AVVHPRPLSWAASLHLALRQSRRLRKGWRARRRYAQQHPPTGDL
Sbjct: 440 AVVHPRPLSWAASLHLALRQSRRLRKGWRARRRYAQQHPPTGDL 483


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,391,958
Number of extensions: 54689
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 375
Effective length of database: 1,198,455
Effective search space: 449420625
Effective search space used: 449420625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)