BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0020.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312530|ref|YP_003776622.1| transmembrane protein [Herbaspi...   521   e-149
gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734...   181   6e-47

>gi|300312530|ref|YP_003776622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  521 bits (1342), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/269 (98%), Positives = 265/269 (98%)

Query: 1   MADNAGIVDFPVCPPMPLSVLVSALASTLLLPPVSPLLLALAGLLLRRHAPHWRRFGLLL 60
           MADNAGIVDFPVC PMPLSVLVSALASTLLLPPVSPLLLALAGLLLRRHAP WRRFGLLL
Sbjct: 1   MADNAGIVDFPVCLPMPLSVLVSALASTLLLPPVSPLLLALAGLLLRRHAPRWRRFGLLL 60

Query: 61  IVLGVATLLVLSTRVGSLLLIAPLENSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDDA 120
           IVLGVATLLVLSTRVGSLLLIAPLENSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDDA
Sbjct: 61  IVLGVATLLVLSTRVGSLLLIAPLENSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDDA 120

Query: 121 NAIGMKRLQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSN 180
           NAIGMKRLQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSN
Sbjct: 121 NAIGMKRLQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSN 180

Query: 181 TTYDNATLSAAMLKEAGVSRILLVTDSLHMPRAMQVFATTELQVQAAPTVFAGQARTRVT 240
           TTYDNATLSAAMLKEAG+SRILLVTDSLHMPRAMQVFATT LQVQAAPTVFAGQARTRVT
Sbjct: 181 TTYDNATLSAAMLKEAGISRILLVTDSLHMPRAMQVFATTGLQVQAAPTVFAGQARTRVT 240

Query: 241 DYLPNAASLQLASYALREWIGQLWYWVRQ 269
           DYLPNAASLQLASYALREWIGQLWY VRQ
Sbjct: 241 DYLPNAASLQLASYALREWIGQLWYRVRQ 269


>gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  181 bits (459), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/231 (45%), Positives = 140/231 (60%), Gaps = 4/231 (1%)

Query: 42  AGLLLRRHAPHWRRFGLLLIVLGVATLLVLSTRVGSLLLIAPLENSYPVLRSPG--QAQA 99
           AG LL R        G +++ LGVA L ++     + L++ PLE  YPVL +    QAQA
Sbjct: 23  AGFLLWRRPAPIGHIGQVMVALGVALLTLICMPAVADLMVRPLEQGYPVLSAEAARQAQA 82

Query: 100 IVILGSGRIDRAPEYGGLDDANAIGMKRLQYGAYLHRQSGLPILVTGGNP-DGSPESEAA 158
           IV+L +G +D+APEY G D  + + + RL+Y A L  Q+GLP+LV+GGN  + +PE   A
Sbjct: 83  IVVLAAGSLDQAPEYEGRDQPDYVALARLRYAARLQHQTGLPVLVSGGNAREETPEQNKA 142

Query: 159 V-MARTLERDFAVPVRWQEGRSNTTYDNATLSAAMLKEAGVSRILLVTDSLHMPRAMQVF 217
           + MA  L  DF  PVRW EG S  T +NA  SAA+L+  GV R+LLVTD++HMPRAM  F
Sbjct: 143 LAMAEALREDFRTPVRWIEGGSENTEENALRSAALLRADGVQRVLLVTDAMHMPRAMLAF 202

Query: 218 ATTELQVQAAPTVFAGQARTRVTDYLPNAASLQLASYALREWIGQLWYWVR 268
           A   L   AAPT F    R R    LP+A  L+ + YA  EW+G  WY +R
Sbjct: 203 AQAGLVPTAAPTAFFSLPRWRWPALLPSAEGLRRSWYASYEWLGLGWYRLR 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 769,563
Number of extensions: 29830
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)