BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0019.p (611 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 1053 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 545 e-156 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 474 e-135 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 413 e-116 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 390 e-109 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/611 (98%), Positives = 606/611 (99%), Gaps = 2/611 (0%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 LADSGALSKEDAQKLAKQA+KSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDL+NFKDP Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 AGNNLFVEITKAGSKPEG FVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAFLRTLWQMALLFAAVSAALVALVIVIN GILRTIGGDPAQAAEVANRIAQGDLTPNIE Sbjct: 181 AAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE Sbjct: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG Sbjct: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT Sbjct: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 Query: 541 PPATPAPALRKPAAPQPARPALAASKGAAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP 600 PPAT PALRKPAAPQPARPALAASK AAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP Sbjct: 541 PPAT--PALRKPAAPQPARPALAASKAAAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP 598 Query: 601 AGEDEGDWETF 611 AGEDEGDWETF Sbjct: 599 AGEDEGDWETF 609 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 545 bits (1403), Expect = e-156, Method: Compositional matrix adjust. Identities = 300/528 (56%), Positives = 379/528 (71%), Gaps = 1/528 (0%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M LS KKLWLPLV S +ALL +S++ A R++++ ER+ L ++ + A + + GY Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L G LS+EDAQK A ++ RY DGY ++ + +IVMHPI ++LDG+++ +FKD Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGS-FVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDI 179 GN L+ I GS G ++ Y WP+ G+ +P PK FV +KPW+W+L Y DDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 180 NAAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNI 239 A F R L Q ++ + L + +++R I R+IGG+P +AAE+A +IA GDLT I Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 240 ETAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSI 299 T GD SL+ AV RD L+ T+ IK + +I ++ EIA+GN+DLS RTEQQAGS+ Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIA 359 EETAS MEELTATVKQNA NA+ ANQLA A++VAIQGG VV QVVQTME I SSRKI Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLID 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 420 DSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 DSV KVD G+ LV++AG TM EVV+S++ V+ +V EI++AS EQS+GI +VG AITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 480 GTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQ 527 TQQNAALVEQAAAAAQSLQDQA L LVG F ++ + + A T+ Q Sbjct: 481 TTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRTAPAVTSAQ 528 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 474 bits (1220), Expect = e-135, Method: Compositional matrix adjust. Identities = 301/613 (49%), Positives = 385/613 (62%), Gaps = 18/613 (2%) Query: 5 SFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALADS 64 S +L LV+ LL ++ +SA R ++ERK L + + A +VK Y A + Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 65 GALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDPAGNN 124 G +SKE+AQK A + + ++RY D Y I S +++M P + GK++ + KD G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 125 LFVEITKAGSKPEGSFVHYL--WPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 +VE+ K G + + FV Y+ P + PK S+V+ + WDW + TG ++ D+ A Sbjct: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 Query: 183 FLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 F L+++ + V + +++ I R I ++GG+PA A ++A RIA GDLT ++T Sbjct: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 Query: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 PGD+ SLLYA+ +MR+ L I I+ I ++EIA+GNLDLS RTE+QAGS+ T Sbjct: 243 PGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATT 302 Query: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 AS M+ LTATVKQNADNARQA QLA SAS++A +GG VV QVVQTMEGIT SSRKIADII Sbjct: 303 ASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 Query: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 +V +GS V +AG TM EVVA+VR +TDIVGEIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 QRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQ 482 Query: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQ----AAKPATRPVQP 538 QNAALVEQAAAAA SL++QA L V F VDG + AP A A V+ Sbjct: 483 QNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATATPTAVRK 542 Query: 539 TTPPATPAPALRKPAAPQPARPALAASKGAAPKAAPKTAAAQPAKAEAPAAKPTGKSPSR 598 A A KP A +P K A A APAA + Sbjct: 543 APAAAAIPVASAKPLAGKP-----------LTKPAGGAAPLPAPAKAAPAAAKPASAAKA 591 Query: 599 LPAGEDEGDWETF 611 LPAG D+GDWETF Sbjct: 592 LPAG-DDGDWETF 603 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/331 (66%), Positives = 268/331 (80%), Gaps = 1/331 (0%) Query: 202 VALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIETAPGDSSSLLYAVRSMRDSLL 261 + + +++ RG+L+ +GG+P AA++A +IA GDLT N++T GD+SSLL+A+++MRDSL+ Sbjct: 200 ILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLV 259 Query: 262 STITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEETASAMEELTATVKQNADNAR 321 S + ++ TI AS EIASGNLDLS RTEQQA S+EETASAMEEL TVKQNADNA+ Sbjct: 260 SIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAK 319 Query: 322 QANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVIDGIAFQTNILALNAAV 381 QA+QLA SASEVA QGG VV+QVV TM+GI SSRKI DII VIDGIAFQTNILALNAAV Sbjct: 320 QASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAV 379 Query: 382 EAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDTGSKLVEQAGATMTE 441 EAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI LI+DSV++++ GS LVEQAG TM Sbjct: 380 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMEN 439 Query: 442 VVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQ 501 VV SV+RVTD+V EIS ASQEQS GI +V AIT MDE TQQN+ALVE+AAAAA S+++Q Sbjct: 440 VVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQ 499 Query: 502 AATLAGLVGRFHVDGSQASIAPTAPQAAKPA 532 A L+GLV F +D QA + + QA+ PA Sbjct: 500 AGALSGLVATFRLDAQQARQSGYS-QASAPA 529 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/311 (68%), Positives = 249/311 (80%), Gaps = 8/311 (2%) Query: 177 DDINAAFLR--TLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGD 234 DD+ R TLW + LL A V AL L +++ R + R + +A VA R+AQGD Sbjct: 179 DDMAEQVYRSATLWIIGLLAAIVVIAL-GLAVMVARAVSRPLN----EAVAVAERVAQGD 233 Query: 235 LTPNIE-TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTE 293 LT +I T+ ++ L++++R+M DSL + ++ TI +ASQEIA+GNLDLS RTE Sbjct: 234 LTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTE 293 Query: 294 QQAGSIEETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITD 353 +QAGS+EETASAMEELTATVKQNADNARQANQLA SAS++A QGG+VV QVVQTMEGIT+ Sbjct: 294 EQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITE 353 Query: 354 SSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 SS +IADII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE Sbjct: 354 SSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 Query: 414 IKTLIDDSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRA 473 IK LIDDSV KV GS+LVE+AGATM+EVVASVRRVTD+V EIS+AS EQS GI E+ RA Sbjct: 414 IKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRA 473 Query: 474 ITQMDEGTQQN 484 ITQMDE TQQN Sbjct: 474 ITQMDEVTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.125 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,170,574 Number of extensions: 38538 Number of successful extensions: 520 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 73 Length of query: 611 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 520 Effective length of database: 1,188,985 Effective search space: 618272200 Effective search space used: 618272200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)