BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0016.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237...   391   e-110
gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235...   142   2e-35

>gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/213 (99%), Positives = 211/213 (99%)

Query: 6   MLAAGTGDSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 65
           MLAAGTGDSS PGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW
Sbjct: 1   MLAAGTGDSSGPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 60

Query: 66  MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 125
           MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE
Sbjct: 61  MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 120

Query: 126 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVYSLYC 185
           LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAG AAGLVAGAQGVLVYSLYC
Sbjct: 121 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGAAAGLVAGAQGVLVYSLYC 180

Query: 186 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218
           VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW
Sbjct: 181 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 213


>gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 8/206 (3%)

Query: 2   ELVNMLAAGTGDSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQ 61
           +L++M+A+G      P  R   R    +MA AL +G +GA LL+  +YG+R DL  +L  
Sbjct: 5   DLISMMASGV----TPVDR---RLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGV 57

Query: 62  PLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPS 121
           PLFW+K++FP        L   RL RPG+R+G+   A + LP   +W  G + L  AP +
Sbjct: 58  PLFWIKLAFPTTLAVGALLVLRRLMRPGLRVGVR-WAGIALPGLAVWAGGALVLLSAPLA 116

Query: 122 QRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVY 181
           QRL LL+G SW  C  N+ALLS+P    + W +RG+APT+LR  G  AGL+AGA   +VY
Sbjct: 117 QRLPLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVY 176

Query: 182 SLYCVEMAPPFWGVWYVLGVALPTAA 207
            L+C EM  PFWGVWY LG+ +P AA
Sbjct: 177 CLHCPEMGVPFWGVWYFLGILIPAAA 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 500,094
Number of extensions: 12257
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)