BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0011.p (439 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill... 811 0.0 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 339 2e-94 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 60 3e-10 >gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 439 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/439 (97%), Positives = 432/439 (98%) Query: 1 MNKLQASPLTQIIEEHFAAAFAHHAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQR 60 MNKLQASPL QIIEE FAAAFAHHAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQR Sbjct: 1 MNKLQASPLAQIIEEQFAAAFAHHAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQR 60 Query: 61 GRHEEGVALMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQEALALRPDDAQLWTN 120 GRHEEGV LMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQ+ALALRPDDAQLWTN Sbjct: 61 GRHEEGVTLMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQQALALRPDDAQLWTN 120 Query: 121 LGATRRAQGQHQAAIAACEQALAKAPHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPP 180 LGATRRAQGQHQAAIAACEQALA APHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPP Sbjct: 121 LGATRRAQGQHQAAIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPP 180 Query: 181 HEGKSRELLAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIV 240 HEGKSRELLAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIV Sbjct: 181 HEGKSRELLAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIV 240 Query: 241 RRFDDYADHFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLDAGCGTGLSAAVLAPYA 300 RRFDDYADHFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLDAGCGTGL A VLAPYA Sbjct: 241 RRFDDYADHFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYA 300 Query: 301 LSLEGVDLSSNMLRHAAQHGRYSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFF 360 LSLEGVDLSSNMLRHAAQHGRYSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFF Sbjct: 301 LSLEGVDLSSNMLRHAAQHGRYSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFF 360 Query: 361 TAAQLALQEGGHLVFTVELAGAERPDSYYLHVSGRFRHQRSYIEDCLHAAGMQVVMLREE 420 TAAQLALQEGGHLVFTVELAGAERPDSYYLH SGRFRHQR+YIEDCLHAAGMQVVMLREE Sbjct: 361 TAAQLALQEGGHLVFTVELAGAERPDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREE 420 Query: 421 SLRVEMQQAVPGLVVLARR 439 SLRVEMQQAVPGLVVLARR Sbjct: 421 SLRVEMQQAVPGLVVLARR 439 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 339 bits (870), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 194/420 (46%), Positives = 252/420 (60%), Gaps = 5/420 (1%) Query: 24 HAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVALMRQAALAAPADADW 83 H AGRL++A Y L + H HY G+ LHQ G+H+E + + A+ P +ADW Sbjct: 29 HMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNADW 88 Query: 84 CNDIGNVLFACSRFDEAAQAYQEALALRPDDAQLWTNLGATRRAQGQHQAAIAACEQALA 143 ND GNVLFA + A QAY +ALALRPDD +W NLGA Q + AI+A E+AL Sbjct: 89 HNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAISAFERALQ 148 Query: 144 KAPHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAA 203 P L +L L IH GD+MQ+S YQC A+VLPP EGKS E+L ISFYFLGR+ EAA Sbjct: 149 IDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAA 208 Query: 204 EVCRRWLQEEPGHPIANHMHAA--YAGLPSHTVPRDYIVRRFDDYADHFDSNLVTHLDYR 261 E R WL+EEP +PIA HM AA A +P R YI FD YA+ F++NL+ L YR Sbjct: 209 EAYRAWLREEPDNPIAAHMLAACSQADVPPRASDR-YIESHFDRYAETFEANLLQSLGYR 267 Query: 262 GPQVLNAVLQASLPANADMRVLDAGCGTGLSAAVLAPYALSLEGVDLSSNMLRHAAQHGR 321 GP+++ L P +D GCGTGL +APY+ L GVDL+ ML AA G Sbjct: 268 GPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYSHHLVGVDLAGKMLEKAAATGH 327 Query: 322 YSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVE-LA 380 Y+ L +A++ ++ HP L+ A D +IY G LA A LAL+ GGH VFTVE L Sbjct: 328 YARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGGHFVFTVEALT 387 Query: 381 GAE-RPDSYYLHVSGRFRHQRSYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLARR 439 GA+ P + LH SGR+RH R Y+ L A G ++ ++ LR E++Q V G++ +ARR Sbjct: 388 GADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDSDQILREEVRQPVAGMLFVARR 447 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 5 QASPLTQIIEEHFAAAFAHHAA----GRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQR 60 Q + ++ +H F H A GR +EA Y + L + G L + Sbjct: 64 QLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRL 123 Query: 61 GRHEEGVALMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQEALALRPDDAQLWTN 120 GR+ E +A + +A AP +AD GNVL + +A ++Y+ A+ALRPD + W N Sbjct: 124 GRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFN 183 Query: 121 LGATRRAQGQHQAAIAACEQALAKAPHSLAAL 152 LG T + Q A+ A ++AL P A+ Sbjct: 184 LGNTCKDGNQLDQALRAYDRALEVQPDFFEAI 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,250,179 Number of extensions: 48431 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 3 Length of query: 439 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 351 Effective length of database: 1,203,190 Effective search space: 422319690 Effective search space used: 422319690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)