BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0009.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein...   290   2e-80

>gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  290 bits (743), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   LVRGFSLNGSVTWVDARILENKAYVPTIAGASSVGQRTPYVPEWRATLVASYQPDEHWTY 60
           LVRGFSLNGSVTWVDARILENKAYVPTIAGASSVGQRTPYVPEWRATLVASYQPDEHWTY
Sbjct: 618 LVRGFSLNGSVTWVDARILENKAYVPTIAGASSVGQRTPYVPEWRATLVASYQPDEHWTY 677

Query: 61  TLAGRYSARVYATVDNTDINTHTYQGFDGYTVFDARLRYRFDRHWSAALGVDNLGNRSYF 120
           TLAGRYSARVYATVDNTDINTHTYQGFDGYTVFDARLRYRFDRHWSAALGVDNLGNRSYF
Sbjct: 678 TLAGRYSARVYATVDNTDINTHTYQGFDGYTVFDARLRYRFDRHWSAALGVDNLGNRSYF 737

Query: 121 LFHPFPQRTVLAELKYDF 138
           LFHPFPQRTVLAELKYDF
Sbjct: 738 LFHPFPQRTVLAELKYDF 755


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,673
Number of extensions: 19274
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)