BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0005.p
         (533 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312545|ref|YP_003776637.1| iron-regulated membrane protein...  1060   0.0  

>gi|300312545|ref|YP_003776637.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 546

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/533 (99%), Positives = 530/533 (99%)

Query: 1   MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60
           MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL
Sbjct: 1   MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60

Query: 61  AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120
           AVERAIAHLQQQAPQAERWFISLPS+RSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT
Sbjct: 61  AVERAIAHLQQQAPQAERWFISLPSARSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120

Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180
           TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD
Sbjct: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180

Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240
           FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA
Sbjct: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240

Query: 241 FFEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR 300
           FFEEVFPNVAGRGKAAGQA PLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR
Sbjct: 241 FFEEVFPNVAGRGKAAGQAAPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR 300

Query: 301 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC 360
           QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC
Sbjct: 301 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC 360

Query: 361 GLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW 420
           GLSGYLMVASGALLWAVKTRQK+AKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW
Sbjct: 361 GLSGYLMVASGALLWAVKTRQKEAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW 420

Query: 421 ANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIVVLNIF 480
           ANRLLPLEM QRPQAEINVFFIAWAVAAVLAQLRPGLAMWR QLGAGALLFAGIVVLNIF
Sbjct: 421 ANRLLPLEMTQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRVQLGAGALLFAGIVVLNIF 480

Query: 481 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV 533
           TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV
Sbjct: 481 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV 533


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,773,648
Number of extensions: 76941
Number of successful extensions: 339
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,193,720
Effective search space: 528817960
Effective search space used: 528817960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)