BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0003.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312546|ref|YP_003776638.1| hypothetical protein Hsero_3249...   483   e-138

>gi|300312546|ref|YP_003776638.1| hypothetical protein Hsero_3249
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  483 bits (1244), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60
           MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS
Sbjct: 1   MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60

Query: 61  AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA 120
           AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA
Sbjct: 61  AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA 120

Query: 121 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV 180
           RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV
Sbjct: 121 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV 180

Query: 181 QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239
           QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK
Sbjct: 181 QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 676,035
Number of extensions: 26613
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)