BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0002.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca...   379   e-107
gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf...    77   9e-16
gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf...    65   2e-12

>gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily
           carbonic anhydrase/acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score =  379 bits (974), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MLRRNPSGHRPQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIG 60
           MLRRNPSGHRPQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIG
Sbjct: 1   MLRRNPSGHRPQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIG 60

Query: 61  AHSNIQDGVVIHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGC 120
           AHSNIQDGVVIHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGC
Sbjct: 61  AHSNIQDGVVIHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGC 120

Query: 121 VVRHNAVVDGCDLPPGFYVPSTERIGAKTDLSTIPRVTVAASEFSEDVARTNNELVLGYK 180
           VVRHNAVVDGCDLPPGFYVPSTERIGAKTDLSTIPRVTVAASEFSEDVARTNNELVLGYK
Sbjct: 121 VVRHNAVVDGCDLPPGFYVPSTERIGAKTDLSTIPRVTVAASEFSEDVARTNNELVLGYK 180

Query: 181 KLQNEF 186
           KLQNEF
Sbjct: 181 KLQNEF 186


>gi|300311056|ref|YP_003775148.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 174

 Score = 77.0 bits (188), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 74/126 (58%), Gaps = 10/126 (7%)

Query: 11  PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70
           P++H++A+V  ++ + GKV +  +  +     IR D        E I IG +SN+Q+G V
Sbjct: 11  PEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDN-------ELITIGENSNVQEGAV 63

Query: 71  IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFN-CSIGAGCVVRHNAVV- 128
           +H+  G  + IG+  ++ H+A++HG CT+G+ A IG  +V+ N   IG  C+V   A+V 
Sbjct: 64  LHTDVGYPMVIGKNVTVGHQAMLHG-CTIGEGALIGIQAVVLNGAKIGKNCLVGAGALVT 122

Query: 129 DGCDLP 134
           +G + P
Sbjct: 123 EGKEFP 128


>gi|300313410|ref|YP_003777502.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 200

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 11  PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70
           P V  SAYV  TA+L G VIV  + ++GP A +R       G+   I++   +N+QD  V
Sbjct: 11  PVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLR-------GDFGRIVLQRGANVQDTCV 63

Query: 71  IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGCVVRHNAVVDG 130
           IH   G    + E   I H A++H  CTV  DA +G N+V+ + +     VV   A+V  
Sbjct: 64  IHGFPGHDTVVEENGHIGHGAVLHS-CTVRRDALVGMNAVVMDEA-----VVGEQAIVAA 117

Query: 131 CD-LPPGFYVPSTERIGAKTDLSTIPRVTVAASEFSEDVARTNNELVL 177
           C  +  G  +P    + A      +  +T     + +   RT  +L +
Sbjct: 118 CAFVRAGMQIPP-RTLAAGLPAKVVRELTADEMAWKQAGTRTYQDLTV 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 593,541
Number of extensions: 24163
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)