BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0039.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protei...   695   0.0  

>gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/342 (99%), Positives = 341/342 (99%)

Query: 1   VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLPK 60
           VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLPK
Sbjct: 6   VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLPK 65

Query: 61  ATGPAEPDWRAREEARSADPGAAQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFGYRV 120
           A+GPAEPDWRAREEARSADPG AQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFGYRV
Sbjct: 66  ASGPAEPDWRAREEARSADPGGAQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFGYRV 125

Query: 121 FTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDDPVTPHCGQC 180
           FTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDDPVTPHCGQC
Sbjct: 126 FTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDDPVTPHCGQC 185

Query: 181 SACITACPTGAIVAPYELDARRCISYLTIELKGSIPSELRPLIGNRIYGCDDCQLYCPWN 240
           SACITACPTGAIVAPYELDARRCISYLTIELKGSIPSELRPLIGNRIYGCDDCQLYCPWN
Sbjct: 186 SACITACPTGAIVAPYELDARRCISYLTIELKGSIPSELRPLIGNRIYGCDDCQLYCPWN 245

Query: 241 KFAQRASLPDFDVRHGLDSASLVGLFGWSEEEFLKNTEGSAIRRIGHERWLRNLAVGLGN 300
           KFAQRASLPDFDVRHGLDSASLVGLFGWSEEEFLKNTEGSAIRRIGHERWLRNLAVGLGN
Sbjct: 246 KFAQRASLPDFDVRHGLDSASLVGLFGWSEEEFLKNTEGSAIRRIGHERWLRNLAVGLGN 305

Query: 301 AADAASHRGDAAIVAALRARLAHPSALVVEHVQWALARHGVS 342
           AADAASHRGDAAIVAALRARLAHPSALVVEHVQWALARHGVS
Sbjct: 306 AADAASHRGDAAIVAALRARLAHPSALVVEHVQWALARHGVS 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,058,630
Number of extensions: 40985
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)