BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0030.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...   327   3e-91
gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...    80   9e-17
gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...    69   2e-13

>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  327 bits (838), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 159/160 (99%), Positives = 159/160 (99%)

Query: 1   LTALFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPA 60
           LTALFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPA
Sbjct: 19  LTALFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPA 78

Query: 61  YRFDLPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVI 120
           YRFDLPRLSVGSAFQQRVWQAIM IPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVI
Sbjct: 79  YRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVI 138

Query: 121 PCHRVTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGVAGY 160
           PCHRVTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGVAGY
Sbjct: 139 PCHRVTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGVAGY 178


>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 80.1 bits (196), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 10/124 (8%)

Query: 38  KDATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVA 97
           +D   AV  +   Q+  Y A     FDLP    G+ FQ++VW A++ IP GQ  TY  +A
Sbjct: 44  EDEDRAVLIETEHQLREYFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIA 103

Query: 98  KRI--QSAPRAVGQACGANWYPLVIPCHRVTAAGG-LGGFSHHDAEDGFHLEVKRWLLRH 154
           +++  + A RAVG A G N   ++ PCHRV  AGG L GF+      G H  VK+ LL  
Sbjct: 104 RQLGNEKAVRAVGAANGRNPICIIAPCHRVIGAGGELTGFA-----GGLH--VKKLLLAI 156

Query: 155 EGVA 158
           EG++
Sbjct: 157 EGIS 160


>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 42  DAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMTIPCGQVLTYGQVAKRI- 100
           DA   + + Q+   L DP     LP    G+AFQQRVWQA+ +IP G  LTY ++A R+ 
Sbjct: 253 DADFERTLAQVLAALEDPRQGAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLG 312

Query: 101 -QSAPRAVGQACGANWYPLVIPCHRVTAAGG 130
             +A RAV  AC  N   ++IPCHR+    G
Sbjct: 313 QPAAVRAVANACANNEIAVLIPCHRIVRLDG 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,351
Number of extensions: 19186
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)