BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0018.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310194|ref|YP_003774286.1| thioredoxin 1 [Herbaspirillum s...   216   4e-58
gi|300312135|ref|YP_003776227.1| thioredoxin 1 [Herbaspirillum s...   115   9e-28

>gi|300310194|ref|YP_003774286.1| thioredoxin 1 [Herbaspirillum
           seropedicae SmR1]
          Length = 108

 Score =  216 bits (549), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MSDIIKHISDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYEGKLQIAKLD 60
           MSDIIKHISDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYEGKLQIAKLD
Sbjct: 1   MSDIIKHISDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYEGKLQIAKLD 60

Query: 61  VDANQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI 108
           VDANQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI
Sbjct: 61  VDANQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI 108


>gi|300312135|ref|YP_003776227.1| thioredoxin 1 [Herbaspirillum
           seropedicae SmR1]
          Length = 110

 Score =  115 bits (288), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 78/108 (72%)

Query: 1   MSDIIKHISDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYEGKLQIAKLD 60
           MS  I  ++DASFEADVL+S + VLVDFWA WC PCK +AP+L ++A+E+   L+IAK++
Sbjct: 1   MSSNIITVTDASFEADVLQSSQAVLVDFWAPWCMPCKMLAPLLADLAEEFHDTLRIAKVN 60

Query: 61  VDANQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI 108
            D N+    K+ +RG+P+++LF +G   A+ VG  +K +LV+FI+  +
Sbjct: 61  ADENKQHMEKYSVRGLPSILLFVDGVERARLVGMQSKTRLVTFIEDQL 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 261,726
Number of extensions: 8800
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)