BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0017.p
         (924 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310195|ref|YP_003774287.1| inactivated superfamily I helic...  1841   0.0  

>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score = 1841 bits (4768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/924 (99%), Positives = 921/924 (99%)

Query: 1   MLSATVPIPPSPEFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60
           MLSATVPIPPSP+FWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK
Sbjct: 1   MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60

Query: 61  TALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120
            ALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR
Sbjct: 61  AALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120

Query: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAMLS 180
           RNADLLPLAHTLLDLSDELSLALLPEIRASAGE+AIAGRWTQALAQLLAPLAPSAHAMLS
Sbjct: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPSAHAMLS 180

Query: 181 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH 240
           EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH
Sbjct: 181 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH 240

Query: 241 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPSALP 300
           QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPP+ASAAAPSALP
Sbjct: 241 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSALP 300

Query: 301 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW 360
           LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW
Sbjct: 301 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW 360

Query: 361 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA 420
           KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA
Sbjct: 361 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA 420

Query: 421 GDWQALQTAFADASDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE 480
           GDWQALQTAFADA DPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE
Sbjct: 421 GDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE 480

Query: 481 DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA 540
           DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA
Sbjct: 481 DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA 540

Query: 541 RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP 600
           RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP
Sbjct: 541 RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP 600

Query: 601 EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA 660
           EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA
Sbjct: 601 EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA 660

Query: 661 PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSDMPEKRDYGSWLHEILYKYHAH 720
           PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELS+MPEKRDYGSWLHEILYKYHAH
Sbjct: 661 PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHAH 720

Query: 721 LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ 780
           LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ
Sbjct: 721 LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ 780

Query: 781 FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ 840
           FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ
Sbjct: 781 FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ 840

Query: 841 LAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL 900
           LAFYGLLAGG IEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL
Sbjct: 841 LAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL 900

Query: 901 PANGIESVCQYCEMRGLCRKGAWL 924
           PANGIESVCQYCEMRGLCRKGAWL
Sbjct: 901 PANGIESVCQYCEMRGLCRKGAWL 924


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,589,892
Number of extensions: 100084
Number of successful extensions: 338
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 1
Length of query: 924
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 830
Effective length of database: 1,174,780
Effective search space: 975067400
Effective search space used: 975067400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)