BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0016.p (1158 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her... 2281 0.0 gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her... 67 9e-12 >gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 2281 bits (5912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1142/1158 (98%), Positives = 1147/1158 (99%) Query: 1 VSAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60 +SAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA Sbjct: 1 MSAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60 Query: 61 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG 120 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG Sbjct: 61 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG 120 Query: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLR 180 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVP+GYTLTEKNGELLDEAYRRFMQTLR Sbjct: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLTEKNGELLDEAYRRFMQTLR 180 Query: 181 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAP 240 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDD+QE EEGAEEHAAPAP Sbjct: 181 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDEQEGEEGAEEHAAPAP 240 Query: 241 LRWLQALCGADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPA 300 LRWLQALCGADAQRDARLSLWEEHALVAR SQLAILLGQGGSANQARAVAIESALSAGPA Sbjct: 241 LRWLQALCGADAQRDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPA 300 Query: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAAL AFE EFNAVGEALRKL Sbjct: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALVAFEMEFNAVGEALRKL 360 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ Sbjct: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP Sbjct: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 Query: 481 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFSQQTTLGLAGGEVW 540 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLF+QQTTLGLAGGEVW Sbjct: 481 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVW 540 Query: 541 RLPLARPDDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLEGQALAQ 600 RLPLARPDDGAENVSSAD DAASAAPEGE EVIPWRNPLTTPRGEEDDARRLLEG ALAQ Sbjct: 541 RLPLARPDDGAENVSSADTDAASAAPEGEPEVIPWRNPLTTPRGEEDDARRLLEGLALAQ 600 Query: 601 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES 660 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES Sbjct: 601 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES 660 Query: 661 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWQQLQAM 720 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWW+QLQAM Sbjct: 661 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAM 720 Query: 721 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLTRSQTLG 780 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVA YAQHASPLTRSQTLG Sbjct: 721 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVARYAQHASPLTRSQTLG 780 Query: 781 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASADAVRILTVHSAK 840 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDAS DAVRILTVHSAK Sbjct: 781 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAK 840 Query: 841 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET 900 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET Sbjct: 841 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET 900 Query: 901 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQGSWYQRLFASDAPVREISEEA 960 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGA AGGVVQGSWYQRLFASDAPVREISEEA Sbjct: 901 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGADAGGVVQGSWYQRLFASDAPVREISEEA 960 Query: 961 VHGAEAADIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL 1020 VHGAEAA IEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL Sbjct: 961 VHGAEAAAIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL 1020 Query: 1021 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR 1080 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR Sbjct: 1021 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR 1080 Query: 1081 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS 1140 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS Sbjct: 1081 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS 1140 Query: 1141 DKQIRSALITAEGALIEH 1158 DKQIRSALITAEGALIEH Sbjct: 1141 DKQIRSALITAEGALIEH 1158 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 759 Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 13/130 (10%) Query: 387 YQEVKAEQRVLDFADLEWQAYRLL-RNEASAAYLQTRLDARYKHILLDEFQDTNPLQWCI 445 Y + + V+DFA+L + Y LL RN+ L+ +R++HIL+DEFQDTN LQ+ Sbjct: 174 YDQQCQREGVVDFAELLLRTYELLSRNQP----LREHYQSRFRHILVDEFQDTNDLQY-- 227 Query: 446 VRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRAQGAAILRANQTRR 505 WL G +VF VGD QSIY FR A A + Q +++ Q R Sbjct: 228 --KWLKLMAGQ--HNAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQN--LIKLEQNYR 281 Query: 506 NATAVVDVLN 515 + ++D N Sbjct: 282 SHGHILDTAN 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,221,281 Number of extensions: 127157 Number of successful extensions: 466 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 471 Number of HSP's successfully gapped: 2 Length of query: 1158 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1062 Effective length of database: 1,165,310 Effective search space: 1237559220 Effective search space used: 1237559220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)