BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0159.p (154 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 315 1e-87 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 95 3e-21 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 87 9e-19 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 68 3e-13 gi|300311884|ref|YP_003775976.1| two component response regulato... 55 3e-09 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 315 bits (806), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%) Query: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 Query: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP Sbjct: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 Query: 121 QYMQAVVECAQRWARPRRRRSGSGAARRKPPTSA 154 QYMQAVVECAQRWARPRRRRSGSGAARRKPPTSA Sbjct: 121 QYMQAVVECAQRWARPRRRRSGSGAARRKPPTSA 154 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 94.7 bits (234), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 M P I+MI+ + EA ELARFALWR+ HC + + A LL R D P LI Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72 Query: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 LL+ M +G++ + ++A PVVVFP D E + L+AGA+AYL KP Sbjct: 73 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGER-EALDAGATAYLPKPIDGE 131 Query: 121 QYMQAVVECAQRWA 134 +Y + VVE +RW Sbjct: 132 RYARCVVEMVERWC 145 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 86.7 bits (213), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLH-RHRLDDARLPDL 59 M P ILM++ + E+VELARF LWR+ C W+++A+ A L + + R A LP L Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 60 ILLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETA 119 ILL+P + G++ + ++A TR++PVV+F S + AGA+ YL+KP A Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 120 PQYMQAVVECAQRW 133 +M+ V + +RW Sbjct: 121 RAFMELVSQTVRRW 134 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 68.2 bits (165), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 4 PIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLILLD 63 P IL+I+++ +A+E ARFALWRS+ C ++W+D+A+ A LL + P LILLD Sbjct: 8 PRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQPTLILLD 67 Query: 64 P-GMMENNGVDFILAMKAGRDTRSIPVVVFP----DSDYPPEMPDLLEAGASAYLLKPET 118 P G + + + IP+V+F SD+ E + + A KP Sbjct: 68 PRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAA-----KPAR 122 Query: 119 APQYMQAVVECAQR 132 YM+ V C Q+ Sbjct: 123 PADYMELVTRCVQQ 136 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%) Query: 6 ILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARL-PDLILLDP 64 I++++ + E EL R AL L W+ +A+ A + L P LILLD Sbjct: 8 IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67 Query: 65 GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYMQ 124 + +G DF+ +K+ T IPVV+F SD ++ E GA+ Y++K ++M Sbjct: 68 NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127 Query: 125 AVVECAQRW---ARPRRRRSGSG 144 VV+ W RP R G+G Sbjct: 128 TVVDTGIYWRNRNRPARNEEGAG 150 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 401,112 Number of extensions: 13309 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 5 Length of query: 154 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 77 Effective length of database: 1,255,275 Effective search space: 96656175 Effective search space used: 96656175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)