BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0158.p (423 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 820 0.0 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 333 2e-92 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 77 2e-15 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 72 8e-14 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/399 (99%), Positives = 397/399 (99%) Query: 24 MNASLNTAASQPTRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAER 83 MNASL TAASQPTRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAER Sbjct: 1 MNASLTTAASQPTRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAER 60 Query: 84 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGF 143 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGF Sbjct: 61 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGF 120 Query: 144 IAICMARLPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMM 203 IAICMARLPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMM Sbjct: 121 IAICMARLPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMM 180 Query: 204 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDF 263 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDF Sbjct: 181 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDF 240 Query: 264 DVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRI 323 DVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRI Sbjct: 241 DVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRI 300 Query: 324 DGVQGRIEFETLTSYPGMCTPADDPLVTSALHILGSERARKVGFGTEGGLFGQAGMPAVI 383 DGVQGRIEFETLTSYPGMCTPADDPLVTSAL ILGSERARKVGFGTEGGLFGQAGMPAVI Sbjct: 301 DGVQGRIEFETLTSYPGMCTPADDPLVTSALRILGSERARKVGFGTEGGLFGQAGMPAVI 360 Query: 384 CGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQP 422 CGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQP Sbjct: 361 CGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQP 399 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 169/381 (44%), Positives = 231/381 (60%), Gaps = 8/381 (2%) Query: 36 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATL-GD 94 TRQ L+ TL+ F+T SR SNL LI VRD L++ G + L ++ ++ KANLFATL Sbjct: 8 TRQWLE---TLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPAT 64 Query: 95 AGP----GRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 150 AGP G V SGHTDVVPV GQKWDTDPF DG L+ RG+CDMKGFIA +A Sbjct: 65 AGPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALAL 124 Query: 151 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 210 +P P+H +FS+DEE+GC+G +L ++ + I+ G ++GEPT M V+AHK Sbjct: 125 VPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHK 184 Query: 211 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 270 G + C VHG +AHSS G N+I+ AA + IR+ A + +G D FDVP+S++ Sbjct: 185 GINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTM 244 Query: 271 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 330 T GG A N IP+ EF +E R LPG+ A++ ++ Y + +LP+MR + R+ Sbjct: 245 TTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARV 304 Query: 331 EFETLTSYPGMCTPADDPLVTSALHILGSERARKVGFGTEGGLFGQAGMPAVICGPGDIA 390 E + P + + + G + RKV +GTE GLF Q G+P ++CGPGDI Sbjct: 305 EIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIG 364 Query: 391 HAHKPNEFVTLEQLARCERFF 411 +AHKPNEFVTL Q+ CE+F Sbjct: 365 NAHKPNEFVTLAQMEHCEQFL 385 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 26/329 (7%) Query: 93 GDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMARLP 152 GD GP + H DVVP G+ W DP+ +ADG+++GR A K A + Sbjct: 86 GDGGPT---LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATR 141 Query: 153 AIDL--ARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 210 A++ A L + F+YDEE G + L+Q RP ++ V AH Sbjct: 142 ALEAVGASLRGGVELHFTYDEEFGG--LLGPGWLLEQKLTRPD-YVLAAGFSYNVVTAHN 198 Query: 211 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVP---Y 267 + +VHG A H S P G +++ AA L AL G+++ +P + Sbjct: 199 ACLQFEITVHGRATHGSMPETGHDALQ-AATAILNAIYGAL----PGLKEIRSAIPGITH 253 Query: 268 SSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEI--LPQMRIDG 325 ++ GG N++P K + R +P DP++V V+ E + LP +R++ Sbjct: 254 PTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVE- 312 Query: 326 VQGRIEFETLTSYPGMCTPADDPLVTSALHILGSE-RARKVGFGTEGGLFGQAGMPAVIC 384 ++ + L PG + L+ +A ++G T+ L+G+ G+P V+ Sbjct: 313 IRRLLLARALRPLPGHEKLVES-LLRNAREVMGETLTTNGSALYTDARLYGEQGIPVVLF 371 Query: 385 GPGDI----AHAHKPNEFVTLEQLARCER 409 G G ++A + +E + L+ L + + Sbjct: 372 GAGPRTLMESNAKQADENLALDDLRKATK 400 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 26/223 (11%) Query: 87 NLFATLGDAGPGRFGTVFSGHTDVVPVTG--QKWDTDPFVAHVADGKLFGRGACDMKGFI 144 NL+A G A P VF+GHTDVVP TG +KW + PF + +G+L+GRGA DMK I Sbjct: 51 NLWARKGTAQPL---VVFAGHTDVVP-TGPLEKWQSHPFQPTLREGRLYGRGASDMKTSI 106 Query: 145 AICMARLPAIDLARLHTPLH-----FSFSYDEEVGCL-GVRELLADLQQNDIRPTGVIIG 198 A + A P H F + DEE + G + L+ + I+G Sbjct: 107 AAMVVACEEFTAAH---PDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVG 163 Query: 199 EPTMMQPV-----IAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRV 253 EPT + + +G S + +V G H + P L N I AA + E+ Sbjct: 164 EPTSAKTLGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAP---ALAELVAEQ 220 Query: 254 RHSGVQDDDFDVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRF 296 +G +++ +P S + + G A N+IP + F RF Sbjct: 221 WDAG---NEYYLPTSWQISNIHGGTGASNVIPGEVMIDFNFRF 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,443,262 Number of extensions: 65120 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 5 Length of query: 423 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 335 Effective length of database: 1,203,190 Effective search space: 403068650 Effective search space used: 403068650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)