BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0157.p (385 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 750 0.0 gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 325 5e-90 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 127 2e-30 gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 92 5e-20 gi|300312340|ref|YP_003776432.1| transporter transmembrane prote... 64 2e-11 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/385 (99%), Positives = 385/385 (100%) Query: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI 60 MNWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI Sbjct: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI 60 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV Sbjct: 61 LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV 120 Query: 121 APQKRAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPK 180 APQKRAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPK Sbjct: 121 APQKRAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPK 180 Query: 181 KIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWV 240 KIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWV Sbjct: 181 KIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWV 240 Query: 241 LLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGA 300 LLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGA Sbjct: 241 LLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGA 300 Query: 301 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIG 360 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIG Sbjct: 301 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIG 360 Query: 361 SFFALLGLATVAFSASLDKRVRAPA 385 +FFALLGLATVAFSASLDKRVRAPA Sbjct: 361 AFFALLGLATVAFSASLDKRVRAPA 385 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 325 bits (832), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 187/374 (50%), Positives = 247/374 (66%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAK 64 L+AL ++AF IGTTEFVIMGLLP+VA +LGV+ +AG+LV+GYALGV GAP+L T + Sbjct: 5 LWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLLTATTGR 64 Query: 65 WPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQK 124 PRK LV LM +F++GN+ CA+AP+Y LM+ RVV +F H AFFG+GSVVA LV +K Sbjct: 65 LPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVATSLVPKEK 124 Query: 125 RAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPKKIPM 184 +A A+ALMFTGLTVAN+LGVP GT G + GWR+TF AVT IGV+A ++P+ Sbjct: 125 QASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTVIGVIALAATAVLVPRSQGG 184 Query: 185 QAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWVLLLF 244 + + +E R ++ +V L LL + L +F+ TYIA IL D++GF S +LLLF Sbjct: 185 EETDFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDLSGFPASAVSPILLLF 244 Query: 245 GAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGAFAFA 304 G G+ +G L GGKLAD KLM + G + +A VL LF +T K + + G AFA Sbjct: 245 GLGLVIGNLAGGKLADKKLMATLLGSLVLLAAVLVLFGLTVDNKVAAIIGVGLMGMAAFA 304 Query: 305 VVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIGSFFA 364 VP Q+RVL+ A GAPNLAS+ N AFNLGNA GAW+GG+ I G L +P + + Sbjct: 305 TVPPLQMRVLEKATGAPNLASSANIAAFNLGNAAGAWLGGVTIDHGPGLHAVPYVAALLP 364 Query: 365 LLGLATVAFSASLD 378 L G+ S +D Sbjct: 365 LAGIVVALVSWKMD 378 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 177/356 (49%), Gaps = 33/356 (9%) Query: 8 LAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAKWPR 67 LA+ F IGT F+I LLP +A D G++ P LV + L +A +PI +L+A R Sbjct: 29 LALGTFAIGTEGFMIAPLLPRMAADFGMSVPMVASLVVIFTLVLALSSPISTVLSAAMNR 88 Query: 68 KQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQKRAQ 127 ++ L+ M F N+L A + ++ L+VAR++ A + S +A +VAP +R + Sbjct: 89 RRVLIAAMTAFTAANLLAACSSSFTGLLVARLLMAVAAGLYTPNASALAGAMVAPGQRGR 148 Query: 128 AVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIG--VLAAIMLWTMLPKKIPMQ 185 A+A++ G+T + LG+PLG GHA GWR+TF AV+A+G LA I+L +P Q Sbjct: 149 ALAIVSGGMTSPSALGLPLGAVVGHAFGWRATFLAVSAMGAVALAGILL------GVPRQ 202 Query: 186 AG------NIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESW 239 AG + + I +VQ L + L S+ ++ YIA L V F + S Sbjct: 203 AGAHLHVAGLRERMAVIGQPQVQRLLAVTLLWSVGAYAAYPYIAPYLSHVLSFGESRISL 262 Query: 240 VLLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKW-------PTL 292 + L+GA VG VGG L D + V L + ++L +++ + P L Sbjct: 263 TVSLWGAAAAVGVSVGGTLNDRYGSARVVRVSLLL-LMLSFWTLAAATALPPPLALGPVL 321 Query: 293 ATMFAWGAFAFAVVPGAQIRVLDTARGAPNLA--------STLNQGAFNLGNATGA 340 + WG +A P R++ GAP A STL G F+LG+A GA Sbjct: 322 LAVVVWGFSVWAFFPAQMARLIGA--GAPAQAPVALSLNTSTLYLG-FSLGSAAGA 374 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 5/244 (2%) Query: 2 NWP-LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI 60 NW + +LA+ F + T EF+ LL +A DL V+ AAG V+ A+ A AP + + Sbjct: 35 NWSGIASLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPL 94 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LT RK+ ++ L L ++ N+L APN L+VARV+ F+ + + +A LV Sbjct: 95 LTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLV 154 Query: 121 APQKRAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPK 180 A+A++L+ TG++VA + P+G G+ GWRS F A + ++A + W +P+ Sbjct: 155 PDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPR 214 Query: 181 KIPMQAGN--IFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQES 238 P + + E D RV L + ++ F+ TYI ++ +T + S Sbjct: 215 LPPKDHPSLKVLAELLGRKDVRVALLAVLLVVS--GHFAGFTYIRPLMEQITHMSVTTIS 272 Query: 239 WVLL 242 VLL Sbjct: 273 AVLL 276 >gi|300312340|ref|YP_003776432.1| transporter transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 421 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%) Query: 32 DLGVTAPAAGMLVSGYALGVAAGAPILAILTAKWPRKQALVGLMCLFILGNVLCALAPNY 91 + +T G++VS YA A + A ++ RK+ L+ F+LG V C LA ++ Sbjct: 51 SMQITPQQFGLVVSAYAFSAGASGLLTAGFADRFDRKRLLLFFYGGFVLGTVWCGLAQSF 110 Query: 92 VFLMVARVVTAFCHAAFFGIGSVVAAELVAPQKRAQAVALMFTGLTVANILGVPLGTAFG 151 L++AR+VT I +A +L AP R + + ++ T + +LG+P+G Sbjct: 111 ESLLLARIVTGLFGGVIGSITLAIATDLFAPHLRGRVMGVIQTSFAASQVLGIPIGLYLS 170 Query: 152 HAAGWRSTFGAVTAIGV 168 + W F A+ A+G+ Sbjct: 171 NRWNWHVPFLAMAALGL 187 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,185,221 Number of extensions: 50909 Number of successful extensions: 395 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 387 Number of HSP's successfully gapped: 12 Length of query: 385 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 298 Effective length of database: 1,207,925 Effective search space: 359961650 Effective search space used: 359961650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)