BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0152.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206...   459   e-130

>gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  459 bits (1180), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/284 (96%), Positives = 275/284 (96%), Gaps = 9/284 (3%)

Query: 1   VNLLPIFLVGLMGSVHCIGMCGGIVGALSSAAPVRPTPTPAAPLLSVAAPGRNDGARLLR 60
           +NLLPIFLVGLMGSVHCIGMCGGIVGALSSAAPVRPTPTPAAPLLSVAAPGRNDGARLLR
Sbjct: 1   MNLLPIFLVGLMGSVHCIGMCGGIVGALSSAAPVRPTPTPAAPLLSVAAPGRNDGARLLR 60

Query: 61  IIPIHPAGGVQVQAMAQDLVRVLCYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAPA 120
           IIPIHPAGGVQVQAMAQDLVRVLCYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAPA
Sbjct: 61  IIPIHPAGGVQVQAMAQDLVRVLCYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAPA 120

Query: 121 QRVAYLITNIVLVLLGLYLTQWWPALARLEQWGSALWVRVRPLAARLVPVDTPAKALLLG 180
           QRVAYLITNIVLVLLGLYLTQWWPALARLEQWGSALWVRVRPLAARLVPVDTPAKALLLG
Sbjct: 121 QRVAYLITNIVLVLLGLYLTQWWPALARLEQWGSALWVRVRPLAARLVPVDTPAKALLLG 180

Query: 181 SLWGWLPCGMVYSALLTALMAGSAMQGALTMLAFGAGTLPVLLAAGLSG---------PA 231
           SLWGWLPCGMVYSALLTALMAGSAMQGALTMLAFGAGTLPVLLAAGLSG         PA
Sbjct: 181 SLWGWLPCGMVYSALLTALMAGSAMQGALTMLAFGAGTLPVLLAAGLSGARLRQLAQRPA 240

Query: 232 VRLAAGVVVLAFGIMGLLRGAEIGGMGIARGWIDVFCISPAHGG 275
           VRLAAGVVVLAFGIMGLLRGAEIGGMGIARGWIDVFCISPAHGG
Sbjct: 241 VRLAAGVVVLAFGIMGLLRGAEIGGMGIARGWIDVFCISPAHGG 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,749
Number of extensions: 29833
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)