BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0142.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   573   e-165
gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   322   3e-89
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   155   3e-39

>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  573 bits (1476), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/278 (99%), Positives = 277/278 (99%)

Query: 1   MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM 60
           MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM
Sbjct: 1   MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM 60

Query: 61  KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG 120
           KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG
Sbjct: 61  KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG 120

Query: 121 MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML 180
           MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML
Sbjct: 121 MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML 180

Query: 181 LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK 240
           LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK
Sbjct: 181 LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK 240

Query: 241 QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTRGTS 278
           QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTR TS
Sbjct: 241 QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTRSTS 278


>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  322 bits (824), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/235 (64%), Positives = 190/235 (80%), Gaps = 2/235 (0%)

Query: 37  ALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALYAVRVG 94
           ALR SC+AC MHQLCLPMGLD+ DM+RL+++I RR KV RD+ LYR+ D+F  LYA+R+G
Sbjct: 20  ALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLG 79

Query: 95  HFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFG 154
           HFKT+Q N +G +QITGFQM GELLGMDAI    H C+AVAL+DSEVCEIPFA LE LF 
Sbjct: 80  HFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFR 139

Query: 155 QIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLR 214
            +P LLR FHR+MS EI+ EQ V++ LG+M A+Q+ AAFL+NLSSRY +RGYSSTRFQLR
Sbjct: 140 DMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSRGYSSTRFQLR 199

Query: 215 MTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269
           MTR+++GNYLGL +ES+SRL++ F+K G++ V  RDVE+ DL  L+ +A G D C
Sbjct: 200 MTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALGNDPC 254


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  155 bits (392), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 2/227 (0%)

Query: 40  SCTACGMHQLCLPMGLDESDMKRLDKIIGRRKVARD-DFLYRIGDRFTALYAVRVGHFKT 98
           +C  C + + C P  L   +  + ++++ RR+     +F YR  D  + ++ VR+G FKT
Sbjct: 17  TCRNCIVKKHCFPHDLSPEETAQFEQLVVRRRRVLRGEFAYRAHDECSKIFIVRLGSFKT 76

Query: 99  YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158
            + +  G   +  F   G+LLG++  S   ++ D +AL+DS++CE+ F  LE+L  +IP 
Sbjct: 77  VRVSRYGGMDVIAFHHTGDLLGIEGASHSAYEVDTIALEDSQICELSFVGLEELSRKIPR 136

Query: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218
           L +   R +S+E+T  Q   +LL   R+EQRFA FL++LS   +  G +ST F LRM+R 
Sbjct: 137 LHQQVWRRLSNEVTLMQQQSLLL-KARSEQRFAFFLLDLSRISSRCGNASTEFSLRMSRT 195

Query: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAG 265
           D+G +LGLT ES+SRLISKFRK GL+ V  R V V+  + L+ LA+G
Sbjct: 196 DIGLFLGLTNESMSRLISKFRKAGLIDVSVRKVRVLSPSTLEELASG 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,699
Number of extensions: 26209
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)