BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0137.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase [Herbaspi...   669   0.0  
gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamil...    60   3e-10

>gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/326 (99%), Positives = 324/326 (99%)

Query: 1   MTSTATTTAATTLRTFYPSIEPYDHGLLDVGDGHRVYWEVCGNPKGKPVVFLHGGPGGGC 60
           MTSTATTT+ATTLRTFYP IEPYDHGLLDVGDGHRVYWEVCGNPKGKPVVFLHGGPGGGC
Sbjct: 1   MTSTATTTSATTLRTFYPPIEPYDHGLLDVGDGHRVYWEVCGNPKGKPVVFLHGGPGGGC 60

Query: 61  GPSHRRLFNPEKYRIVLFDQRGCGRSQPHANLEANTTWDLVADIERLREMLGIERWQVFG 120
           GPSHRRLFNPEKYRIVLFDQRGCGRSQPHANLEANTTWDLVADIERLREMLGIERWQVFG
Sbjct: 61  GPSHRRLFNPEKYRIVLFDQRGCGRSQPHANLEANTTWDLVADIERLREMLGIERWQVFG 120

Query: 121 GSWGSTLALAYAQTHPQRVTELILRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPV 180
           GSWGSTLALAYAQTHPQRVTELILRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPV
Sbjct: 121 GSWGSTLALAYAQTHPQRVTELILRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPV 180

Query: 181 AERGNLVHAYRQRLTGDDETAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFAR 240
           AERGNLVHAYRQRLTGDDETAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFAR
Sbjct: 181 AERGNLVHAYRQRLTGDDETAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFAR 240

Query: 241 IENHYFFHKGFMEEGQLLTNAARLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLI 300
           IENHYFFHKGFMEEGQLL NAARLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLI
Sbjct: 241 IENHYFFHKGFMEEGQLLANAARLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLI 300

Query: 301 DSAGHAYNEPGILDQLIRATDHFADR 326
           DSAGHAYNEPGILDQLIRATDHFADR
Sbjct: 301 DSAGHAYNEPGILDQLIRATDHFADR 326


>gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 42  GNPKGKPVVFLHG--GPGGGCGPSHRRLFNPEKYRIVLFDQRGCGRSQPHANLEANTTWD 99
           G+P+G P++ LHG  G G   G   +RL  P  YR +  DQRG G+S   A   AN   D
Sbjct: 21  GDPQGFPLLLLHGIRGYGETFGDLAQRL--PPGYRCIALDQRGRGQSDWDAG--ANYYTD 76

Query: 100 -LVADIERLREMLGIERWQVFGGSWGSTLALAYAQTHPQRVTELIL 144
             VAD+E L   L + ++ + G S G   A+ YA  HP +V  LI+
Sbjct: 77  AYVADVEALVARLNLRQFDLLGHSMGGINAIVYAARHPAKVRRLII 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,101,700
Number of extensions: 47086
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)