BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0131.p (1243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312484|ref|YP_003776576.1| serine endopeptidase [Herbaspir... 1612 0.0 >gi|300312484|ref|YP_003776576.1| serine endopeptidase [Herbaspirillum seropedicae SmR1] Length = 1371 Score = 1612 bits (4175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 845/920 (91%), Positives = 863/920 (93%), Gaps = 10/920 (1%) Query: 1 LYAAVLLTLGPALGTPASAQSYVNYDGTSTADASAALATWTGHAEFKADWGLGAMNAQYA 60 LYAAVLLTLGPALGTPASAQSYVNYDG STADASAALATWTGHAEFKADWGLGAMNAQYA Sbjct: 24 LYAAVLLTLGPALGTPASAQSYVNYDGASTADASAALATWTGHAEFKADWGLGAMNAQYA 83 Query: 61 YVAGYTGQGIKLGAVDSGLLLTHNEFARRNVKALAVTGAYANDGYQYQDGSQAWKAGDAF 120 YVAGYTGQGIKLGAVDSGLLLTHNEFARRNVKALAVTGAYANDGYQYQDGSQAWKAGDAF Sbjct: 84 YVAGYTGQGIKLGAVDSGLLLTHNEFARRNVKALAVTGAYANDGYQYQDGSQAWKAGDAF 143 Query: 121 NIPGALSPLNDKHGSHVSGTIAAAKNGDGIMGVAFASDYYITNTNGTDSSVYGVNMDYNY 180 ++PGALSPLNDKHGSHVSGTIAAAKNGDGIMGVAFASDYYITNTNGTDSSVYGVNMDYNY Sbjct: 144 SVPGALSPLNDKHGSHVSGTIAAAKNGDGIMGVAFASDYYITNTNGTDSSVYGVNMDYNY 203 Query: 181 FKAAYGNLASAGVRAINSSWGNPDSRDDFGSISGVAAAYQRLQGGGKKSWLDAAADVAQA 240 FKAAYGNLASAGVRAINSSWGNPDSRDDFGSISGVAAAYQRLQGGGKKSWLDAAADVAQA Sbjct: 204 FKAAYGNLASAGVRAINSSWGNPDSRDDFGSISGVAAAYQRLQGGGKKSWLDAAADVAQA 263 Query: 241 SNTLLVWAAGNASKANVNIRSALPYFRPELEQNWIAVAALNTSSMLPSFSNQCGLAKYWC 300 SNTLLVWAAGNASKANVNIRSALPYFRPELEQNWIAVAALNTSSMLPSFSNQCGLAKYWC Sbjct: 264 SNTLLVWAAGNASKANVNIRSALPYFRPELEQNWIAVAALNTSSMLPSFSNQCGLAKYWC 323 Query: 301 VSAPGSGITSLNITSDTALVNASGTSMAAPHVTGALGVLMQRYPDLDNQAIRTILLSTAK 360 VSAPGSGITSLNITSDTALVNASGTSMAAPHVTGALGVLMQRYPDLDNQAIRTILLSTAK Sbjct: 324 VSAPGSGITSLNITSDTALVNASGTSMAAPHVTGALGVLMQRYPDLDNQAIRTILLSTAK 383 Query: 361 HLGTGAADVPNTMFGWGLPDLNKALYGPGQLLGVFKANIAAGSTDTWSNDISEAALVQRK 420 HLGTGAAD PN+MFGWG+PDLNKALYGPGQLLGVFKANIAAGSTDTWSNDISEAALVQRK Sbjct: 384 HLGTGAADAPNSMFGWGVPDLNKALYGPGQLLGVFKANIAAGSTDTWSNDISEAALVQRK 443 Query: 421 SEDKAQLAAWQALSASTLQSAVDSASAQVKAQVDSGYDAALALVQTRAQLNAAYQASNKR 480 SEDKAQLAAWQALSASTLQSAVDSASAQVKAQVDSGYDAALALVQTRAQLNAAYQ+SNKR Sbjct: 444 SEDKAQLAAWQALSASTLQSAVDSASAQVKAQVDSGYDAALALVQTRAQLNAAYQSSNKR 503 Query: 481 EDKTAFQNADKAVAANALAAAILKQSGSGALLSKDQLLAYMLTVDSGVAAANLALGNYNG 540 EDKTAFQNADKAVAANALAAAILKQSGSGALLSKDQLLAYMLTVDSGVAAANLALGNYNG Sbjct: 504 EDKTAFQNADKAVAANALAAAILKQSGSGALLSKDQLLAYMLTVDSGVAAANLALGNYNG 563 Query: 541 QAAYLAAAQKKTDADYVGSLVKTGDGSLTLSGNNSYTGGTRLEGGTLGVGSSTALGTGGL 600 QA YLAAAQKKTDADYVGSLVKTGDGSLTLSGNNSYTGGTRLEGGTLGVGSSTALGTGGL Sbjct: 564 QAVYLAAAQKKTDADYVGSLVKTGDGSLTLSGNNSYTGGTRLEGGTLGVGSSTALGTGGL 623 Query: 601 AMSDGVTLRAAADNLALNNAVSISGAGRIDTQAFNLTLNNGIADGRVPGSLVKQGEGTLR 660 AMSDGVTLRAAADNLALNNAVSI+GAGRIDTQAFNLTLNNGIADGRVPGSLVKQGEGTLR Sbjct: 624 AMSDGVTLRAAADNLALNNAVSINGAGRIDTQAFNLTLNNGIADGRVPGSLVKQGEGTLR 683 Query: 661 VLGTVSYSGNTTIAAGTLSLPTYVQTAGQILTVGVASATQYGKLAVTGAASFAPDAALAV 720 VLGTVSYSGNTTIAAGTLSLPTYVQTAGQILTVGVASATQYGKLAVTGAASFA DAALAV Sbjct: 684 VLGTVSYSGNTTIAAGTLSLPTYVQTAGQILTVGVASATQYGKLAVTGAASFASDAALAV 743 Query: 721 DVAKAATLGNGQRLAGVITAGSLSAPRLAVSDNSVLFDFQPVVASNAVDLDIVSAVSINK 780 DVAKAATLGNGQRLAGVITAGSLSAPRLAVSDNSVLFDFQPVVASNAVDLDIVSAVSINK Sbjct: 744 DVAKAATLGNGQRLAGVITAGSLSAPRLAVSDNSVLFDFQPVVASNAVDLDIVSAVSINK 803 Query: 781 VVLDTLAQAQGPANTPATSTPVASAPASSTPVASTPVVSVPASNTPAASTPVASAPASGT 840 VVLDTLAQAQGPANT TSTPVASA ASSTPVASTPVVS PASNTPAASTPV S PAS T Sbjct: 804 VVLDTLAQAQGPANTATTSTPVASALASSTPVASTPVVSAPASNTPAASTPVVSVPASNT 863 Query: 841 PASSAAA--------PSASAAPAVAPAA-APAARIPSV-VAAATAAATVAPILDRQIQQP 890 PA+S P+AS APA+ PAA P V V A+ +A P++ + Sbjct: 864 PAASTPVVSAPASNTPAASTPVVSAPASNTPAASTPVVSVPASNTSAASTPLVSVPVSNT 923 Query: 891 SSADMAQVVTALGRLPDAAS 910 +A V + P A++ Sbjct: 924 PAASTPVVSVPVSNTPVAST 943 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/451 (97%), Positives = 443/451 (98%) Query: 793 ANTPATSTPVASAPASSTPVASTPVVSVPASNTPAASTPVASAPASGTPASSAAAPSASA 852 +NTPA STPV S P S+TPVASTPVVSVPASNTPAASTPVASAPASGTPASS AAPSASA Sbjct: 921 SNTPAASTPVVSVPVSNTPVASTPVVSVPASNTPAASTPVASAPASGTPASSTAAPSASA 980 Query: 853 APAVAPAAAPAARIPSVVAAATAAATVAPILDRQIQQPSSADMAQVVTALGRLPDAASVL 912 APAV PA APAARIPSVVAAATAAATVAPILDRQIQQPSSADMAQVVTALGRLPDAASVL Sbjct: 981 APAVVPAVAPAARIPSVVAAATAAATVAPILDRQIQQPSSADMAQVVTALGRLPDAASVL 1040 Query: 913 RAASQTLPRNVSDNAIRGVLASLDRVIATRLDLGNLAGSATGTGSGLGYGEAGGDRQVWL 972 RAASQTLPRNVSDNAIRGVLASLDRVIATRLDLGNLAGSATGTGSGLGYGEAGGDRQVWL Sbjct: 1041 RAASQTLPRNVSDNAIRGVLASLDRVIATRLDLGNLAGSATGTGSGLGYGEAGGDRQVWL 1100 Query: 973 MPFESRTNQGDRDGDSGFSASTWGMATGAEMAWDSGRVGLSYAYASTSASGNTAITGAGS 1032 MPFESRTNQGDRDGDSGFSASTWGMATGAEMAWDSGRVGLSYAYASTSASGNTAITGAGS Sbjct: 1101 MPFESRTNQGDRDGDSGFSASTWGMATGAEMAWDSGRVGLSYAYASTSASGNTAITGAGS 1160 Query: 1033 RSRIESNLVALYGSVPLGKLALSWQADAGWNSNRLAREMQFGGLNRIASSRYHTWSAHLG 1092 RSRIESNLVALYGSVPLGKLALSWQADAGWNSNRLAREMQFGGL+RIASSRYHTWSAHLG Sbjct: 1161 RSRIESNLVALYGSVPLGKLALSWQADAGWNSNRLAREMQFGGLHRIASSRYHTWSAHLG 1220 Query: 1093 ANVSHMLPLSEALSVVPALQLDYTRLQSPSYAESGAGDLSLSVQGKRTQALLLGVGTRLN 1152 ANVSH LPLSEALSVVPALQLDYTR+QSPSYAESGAGDLSLSVQGKRTQALLLGVGTRLN Sbjct: 1221 ANVSHTLPLSEALSVVPALQLDYTRMQSPSYAESGAGDLSLSVQGKRTQALLLGVGTRLN 1280 Query: 1153 YALSTTSQISTHVGASYDVINDRGDLVATYAGTPGQAFTAPGSARSAWLFKAGVSYRFQL 1212 YALSTTSQISTHVGASYDVINDRGDLVATYAGTPGQAFTAPGSARSAWLFKAGVSYRFQL Sbjct: 1281 YALSTTSQISTHVGASYDVINDRGDLVATYAGTPGQAFTAPGSARSAWLFKAGVSYRFQL 1340 Query: 1213 TTEADISLRLDAEGRSGFINQSAALKASWRF 1243 TTEADISLRLDAEGRSGFINQSAALKASWRF Sbjct: 1341 TTEADISLRLDAEGRSGFINQSAALKASWRF 1371 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.126 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,289,456 Number of extensions: 133113 Number of successful extensions: 440 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 433 Number of HSP's successfully gapped: 3 Length of query: 1243 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1147 Effective length of database: 1,165,310 Effective search space: 1336610570 Effective search space used: 1336610570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)