BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0130.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312483|ref|YP_003776575.1| membrane protein [Herbaspirillu...   507   e-145

>gi|300312483|ref|YP_003776575.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 281

 Score =  507 bits (1305), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/258 (98%), Positives = 257/258 (99%)

Query: 1   LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN 60
           LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN
Sbjct: 24  LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN 83

Query: 61  PEIDPMAHVMEVTRNVLGDPGAQKQNGGMPARRPTMEDMMAAVRADQENVREKSNRWAES 120
           PEIDPMAHVMEVTRNVLGDPGAQKQN GMPARRPTMEDMMAAVRADQ+NVREKSNRWAES
Sbjct: 84  PEIDPMAHVMEVTRNVLGDPGAQKQNEGMPARRPTMEDMMAAVRADQDNVREKSNRWAES 143

Query: 121 AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP 180
           AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP
Sbjct: 144 AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP 203

Query: 181 DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEGNPEATIEAGPNVKVVARAPVQIVLDVPPA 240
           DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEG+PEATIEAGPNVKVVARAPVQIVLDVPPA
Sbjct: 204 DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEGSPEATIEAGPNVKVVARAPVQIVLDVPPA 263

Query: 241 QRGLFRRGRAALVTMQKD 258
           QRGLFRRGRAALVTMQKD
Sbjct: 264 QRGLFRRGRAALVTMQKD 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 769,269
Number of extensions: 32666
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)