BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0124.p (280 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 556 e-160 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 230 9e-62 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 227 8e-61 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 190 1e-49 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 188 5e-49 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 556 bits (1434), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/280 (98%), Positives = 277/280 (98%) Query: 1 MSNSHQEPVPLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGES 60 MSNSHQ P PLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGES Sbjct: 1 MSNSHQAPAPLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGES 60 Query: 61 GCGKSTLAKMLLGLLPPTSGNVLINGQEVDPTQRKAHARHIQPIFQDPYSSLNPRKTVAE 120 GCGKSTLAKMLLGLLPPTSGNVLINGQEVDPT+RKAHARHIQPIFQDPYSSLNPRKTVAE Sbjct: 61 GCGKSTLAKMLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAE 120 Query: 121 IVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRP 180 IVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRP Sbjct: 121 IVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRP 180 Query: 181 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSI 240 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSI Sbjct: 181 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSI 240 Query: 241 VELQSREQLFSEPQHPYTRMLLASALTPDPGRGIPALAAA 280 VELQSREQLFSEPQH YTRMLLASALTPDPGRGIPALAAA Sbjct: 241 VELQSREQLFSEPQHLYTRMLLASALTPDPGRGIPALAAA 280 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 230 bits (587), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 124/247 (50%), Positives = 165/247 (66%), Gaps = 20/247 (8%) Query: 29 RGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSGNVLINGQE 88 RG +PP A++ V L++ GE +GLVGESGCGKSTL ++ GLL P+ G VL+NG++ Sbjct: 33 RGWSRPPAITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRD 92 Query: 89 VDP--TQRKAHAR-HIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAERNRQVKDIL 145 ++ +A AR +Q IFQ+PY+SLNPR + +IVG AA+ N +V+ L Sbjct: 93 RASLSSREEAEARLQVQMIFQNPYASLNPRLRIDQIVG---------EAAQVNGKVEGDL 143 Query: 146 D--------LVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQ 197 D G+ +YP+Q SGGQRQR+ IARAL ++P +L+CDE +ALDVS+Q Sbjct: 144 DDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQ 203 Query: 198 AQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHPY 257 AQILNL +DL+AE GLTYLFISHDLGVVEH+ DRV +M G +VE +LF +P HPY Sbjct: 204 AQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPY 263 Query: 258 TRMLLAS 264 T+ LLA Sbjct: 264 TQALLAE 270 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 227 bits (578), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 167/259 (64%), Gaps = 6/259 (2%) Query: 16 LELCALTKVYPLKRGLFQPPGQ-LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGL 74 L++ LT + +K G+F Q + AV VS LY GETL +VGESGCGKST + LL L Sbjct: 313 LKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 372 Query: 75 LPPTSGNVLINGQEVDPTQR---KAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGI 131 + G V G+++ R + R IQ IFQDP++SL+PR TV + P+ +HG+ Sbjct: 373 VDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM 432 Query: 132 GNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSA 191 A+ +V +L VG+ +YP++ SGGQRQR+ IARAL L P I+I DE SA Sbjct: 433 KEGAQE--RVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSA 490 Query: 192 LDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFS 251 LDVS+QAQI+NL+LDL+AE G++++FISHD+ VVE + RVAVM G IVE+ R +F Sbjct: 491 LDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFE 550 Query: 252 EPQHPYTRMLLASALTPDP 270 PQHPYTR L+A+ DP Sbjct: 551 NPQHPYTRKLMAAVPVADP 569 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 149/244 (61%), Gaps = 18/244 (7%) Query: 38 LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSGNVLI--------NGQEV 89 + AV D+S + +GETL +VGESG GKS + ++ L+ G + +GQ + Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 90 D------PTQRKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLH-GIGNAAERNRQVK 142 D T R I IFQ+P +SLNP TV E + ++LH G+G AA + ++ Sbjct: 84 DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALR 143 Query: 143 DILDLVGMPE--RTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQI 200 +L++V +PE R ++P+QLSGG RQRV IA AL +P +LI DEPT+ALDV++QAQI Sbjct: 144 -MLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQI 202 Query: 201 LNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHPYTRM 260 L L+ L+ E + +FI+HD+GVV + DRV VM +G VE + LF+ P HPYT+ Sbjct: 203 LQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQS 262 Query: 261 LLAS 264 LLA+ Sbjct: 263 LLAA 266 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/248 (45%), Positives = 163/248 (65%), Gaps = 16/248 (6%) Query: 25 YPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPT-SGNVL 83 Y +K+G F AV+ V L+L RGETLG+VGESG GKSTL LL L + +G++ Sbjct: 278 YHIKQGWFAKRA-FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIR 336 Query: 84 ING--------QEVDPTQRKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAA 135 +G +E+ P + + +Q +FQDP++SL+PR+TV +IVG L+LH +A Sbjct: 337 FDGVPISERPQRELRPLRSR-----MQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSA 391 Query: 136 ERNRQ-VKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDV 194 E+ RQ + L+ VG+ +YP++ SGGQRQR+AIARAL+L+P++L+ DEPTSALDV Sbjct: 392 EQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDV 451 Query: 195 SVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQ 254 +VQ Q+L LL +L+ GL YLFI+HDL VV+ + +V VM G +VE + Q+ +PQ Sbjct: 452 TVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQ 511 Query: 255 HPYTRMLL 262 YTR L+ Sbjct: 512 QEYTRRLV 519 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 36 GQLKAVNDVSLRLYRGETLGLVGESGCGK--STLAKMLLGLLPPTSGNVLINGQEV---- 89 G V+ VS + GE LVGESG GK S+LA M L G++L++GQ+V Sbjct: 16 GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKS 75 Query: 90 DPTQRKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAERNRQVKDILDLVG 149 + ++ + IFQ+P ++LNP T+ + L H NA + R+ +L+ G Sbjct: 76 ERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTG 135 Query: 150 MPE--RTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDL 207 +PE R YP++LSGGQRQR IA AL +P +LI DEPT+ALDV++Q QIL LL L Sbjct: 136 IPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQL 195 Query: 208 KAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHPYTRMLLAS 264 + E + L ISHDL +V H DRV VM +G +VE S +LF+ PQ PYTR LL S Sbjct: 196 QREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQS 252 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 154/234 (65%), Gaps = 6/234 (2%) Query: 35 PGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSGNVLINGQEVDPT-- 92 PG ++ ++D++L + RG T+G++GESG GK+TLA+ + G++ P G++ ++G+ + PT Sbjct: 327 PG-VRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLE 385 Query: 93 -QRKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKL-HGIGNAAERNRQVKDILDLVGM 150 + + R +Q +FQ+ ++LNP ++ I+ PL HG+ A R R+ ++LDLV + Sbjct: 386 GRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMR-RRTAELLDLVQL 444 Query: 151 PERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAE 210 P + P +LSGGQ+QRV +ARAL +PD+++CDE TSALD V A IL LL +L+ E Sbjct: 445 PATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRRE 504 Query: 211 FGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHPYTRMLLAS 264 ++Y+FISHD+ V + D + V+ G +V + RE + + P HPY+ +LL+S Sbjct: 505 LQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMAPPYHPYSHLLLSS 558 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 135/239 (56%), Gaps = 10/239 (4%) Query: 37 QLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPP----TSGNVLINGQEVDPT 92 Q++ V +V+ + RGE L L+GESG GK+T+A LLG G V I +++D Sbjct: 45 QVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQM 104 Query: 93 QRKA----HARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAERNRQVKDILDLV 148 KA H+ I Q ++ NP +T+ + V HG+ + A R+ ++ + Sbjct: 105 DEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRAL 164 Query: 149 GMP--ERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLD 206 +P ++ +YP+Q+SGGQ QRV A AL+ P+++I DEPT+ALDV+ Q ++L + Sbjct: 165 ALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKN 224 Query: 207 LKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHPYTRMLLASA 265 + E G T +++SHDL VV + DR+ V+ G++ E S Q+ P YT+ LLA+A Sbjct: 225 VVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQVLHAPADSYTQCLLAAA 283 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 925,390 Number of extensions: 38750 Number of successful extensions: 514 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 146 Length of query: 280 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 196 Effective length of database: 1,222,130 Effective search space: 239537480 Effective search space used: 239537480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)