BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0115.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC trans... 484 e-138 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 128 5e-31 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 124 8e-30 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 121 5e-29 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 120 1e-28 >gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 484 bits (1245), Expect = e-138, Method: Compositional matrix adjust. Identities = 244/245 (99%), Positives = 245/245 (100%) Query: 1 MTSTLFSPPPAAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAI 60 MTSTLFSPPPAAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAI Sbjct: 1 MTSTLFSPPPAAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAI 60 Query: 61 GGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFS 120 GGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFS Sbjct: 61 GGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFS 120 Query: 121 AYRKQRALQQGANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEII 180 AYRKQRALQQGANL+AAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEII Sbjct: 121 AYRKQRALQQGANLTAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEII 180 Query: 181 VADEPTSALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAARH 240 VADEPTSALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAARH Sbjct: 181 VADEPTSALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAARH 240 Query: 241 AGEAA 245 AGEAA Sbjct: 241 AGEAA 245 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 128 bits (321), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 8/198 (4%) Query: 34 SLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDH 93 L A GE +FI GPSGSGK+T L+ I GI+ P G V V G L LP Q FR++ Sbjct: 38 CLSAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQLADFRLNT 97 Query: 94 LGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANLSAAAQALLAALDLAPSLWQ 153 +GF+FQ ++L P L+ +NV +P + AL AN+ L D+ P Sbjct: 98 IGFVFQDYHLFPRLTSAENVAIPLILKNVDWKSALAS-ANMFLDVVGLKGCGDVFP---- 152 Query: 154 RPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQSGAALV 213 +LS G+QQRVA ARA++ P I++ DEPT++LD D + + LR + ++ Sbjct: 153 ---LKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRRCIL 209 Query: 214 FVSHDLRLAQGFDRLVAL 231 V+HD R+++ DR+V + Sbjct: 210 IVTHDPRISEFADRIVHM 227 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 124 bits (310), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 110/214 (51%), Gaps = 8/214 (3%) Query: 20 FTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLH 79 FT L + + GE V I G SGSGKSTLL +GG+ P G+V +LGK Sbjct: 21 FTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFA 80 Query: 80 TLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANLSAAAQ 139 +L +R R LGF++Q +LLP S LDNV +P ++ A +Q A+ Sbjct: 81 SLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQ-------AR 133 Query: 140 ALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLE 199 +L + LA + P +LS G++QRVA ARAL+ P ++ADEPT LD E Sbjct: 134 EMLGKVGLAQRVTHVP-GELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFE 192 Query: 200 LLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQ 233 L+ G A V V+HD+ LA R++ L + Sbjct: 193 LMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSE 226 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 121 bits (304), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 116/203 (57%), Gaps = 17/203 (8%) Query: 34 SLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDH 93 +L I AGE V I G SGSGKSTL+ +G + P GS V G+ L A + + R +H Sbjct: 29 NLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGKLDADELAQLRREH 88 Query: 94 LGFIFQQFNLLPYLSILDNVLLPCQFSAY----RKQRALQQGANLSAAAQALLAALDLAP 149 GFIFQ+++LL L NV +P ++ R+QRA + LLA L LA Sbjct: 89 FGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGE-----------LLARLGLAE 137 Query: 150 SLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQSG 209 +P QLS GQQQRV+ ARAL+ ++I+ADEPT ALDS Q +++L +E G Sbjct: 138 RSHHKP-GQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKIL-KELHAEG 195 Query: 210 AALVFVSHDLRLAQGFDRLVALE 232 ++ V+HD+++A R++ ++ Sbjct: 196 HTIIIVTHDMQVASHAQRIIEIK 218 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 10/195 (5%) Query: 37 IAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLHTLPAPQRDRFRVDHLGF 96 +AAG + I G SGSGKSTLL + G+ P GSV + G+ ++ L R R LGF Sbjct: 44 VAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGF 103 Query: 97 IFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANLSAAAQALLAALDLAPSLWQRPV 156 +FQ F LL +L+ L+NV+LP + + R A +L + L L P Sbjct: 104 VFQSFQLLGHLNALENVMLPLELRGDARAR---------EKATEMLGRVGLGSRLKHSP- 153 Query: 157 TQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQSGAALVFVS 216 LS G+QQRVA ARA + P +++ADEPT +LD+ +A +EL+ + G+ LV V+ Sbjct: 154 KYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVLVT 213 Query: 217 HDLRLAQGFDRLVAL 231 HD +A R + + Sbjct: 214 HDNAMAARCQRTITI 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 730,343 Number of extensions: 29133 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 354 Number of HSP's successfully gapped: 129 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)