BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0106.p (662 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 1116 0.0 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 613 e-176 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 515 e-147 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 440 e-124 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 390 e-109 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/581 (99%), Positives = 580/581 (99%) Query: 1 VALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWGRSKRVVTGAMKQALKQS 60 VALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEW RSKRVVTGAMKQALKQS Sbjct: 17 VALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVRSKRVVTGAMKQALKQS 76 Query: 61 DVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPAGYDPTARPWYKQAVEAGKPVLTAPY 120 DVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPAGYDPTARPWYKQAVEAGKPVLTAPY Sbjct: 77 DVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPAGYDPTARPWYKQAVEAGKPVLTAPY 136 Query: 121 VDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVII 180 VDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVII Sbjct: 137 VDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVII 196 Query: 181 THPNKELALKPVSSLDQTLSAQSLAGMKQGGSATIGGIRYLLFTQPIANTDWSLVVALDY 240 THPNKELALKPVSSLDQTLSAQSLAGMKQGGSATIGGIRYLLFTQPIANTDWSLVVALDY Sbjct: 197 THPNKELALKPVSSLDQTLSAQSLAGMKQGGSATIGGIRYLLFTQPIANTDWSLVVALDY 256 Query: 241 REATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRR 300 REATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRR Sbjct: 257 REATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRR 316 Query: 301 LDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAG 360 LDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAG Sbjct: 317 LDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAG 376 Query: 361 SLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRK 420 SLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRK Sbjct: 377 SLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRK 436 Query: 421 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGL 480 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGL Sbjct: 437 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGL 496 Query: 481 IDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQM 540 IDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQM Sbjct: 497 IDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQM 556 Query: 541 DEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESG 581 DEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESG Sbjct: 557 DEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESG 597 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust. Identities = 338/588 (57%), Positives = 421/588 (71%), Gaps = 6/588 (1%) Query: 1 VALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWGRSKRVVTGAMKQALKQS 60 V LAM+ + N T RS T+ + +Q QL +S AA I+EW SK++V ++K+A + Sbjct: 37 VVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKKLVVTSIKEAADAA 96 Query: 61 DVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPAG--YDPTARPWYKQAVEAGKPVLTA 118 D LP V AAQ AG FD AY+GY DK + YDPT RPWY+QA + +PVLTA Sbjct: 97 DPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWYQQAAKTSEPVLTA 156 Query: 119 PYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGV 178 PY A+TGKL+VTFA+ V + AV +DV LD VV V IKPTP+S+AF+ G Sbjct: 157 PYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPTPNSYAFLADLSGK 216 Query: 179 IITHPNKELALKPVSSLDQTLSAQSL-AGMKQG--GSATIGGIRYLLFTQPIANTDWSLV 235 II HPN +L LKP++ LD ++ Q+L M+ G + G R +LF + TDW LV Sbjct: 217 IIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQMLFVARVGGTDWLLV 276 Query: 236 VALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDG 295 VALD +A ++ A++ S V+AVL V +A++L I+RLL RL VV+ A+EEIA GDG Sbjct: 277 VALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTVVQGALEEIADGDG 336 Query: 296 DLTRRLDTSGK-DELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSAR 354 DLTRRLDT G+ DEL +I AFN F DKI ++DIR AS ++ +S +IASGNMDLS R Sbjct: 337 DLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQR 396 Query: 355 TEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSI 414 TE QA SLE+TA+AME+LTS+V+ NADNA QANQL+ SAS +A GG +V QVV TM+ I Sbjct: 397 TESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNGI 456 Query: 415 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAA 474 N SS+KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAA Sbjct: 457 NASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAA 516 Query: 475 KEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVG 534 KEIK LI DSV +V+ G VAQAG+T+ VV SV++V+D+V EI+AAS+EQS GI + Sbjct: 517 KEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITAASREQSQGINQAN 576 Query: 535 NAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESGA 582 +AV MD+ TQQNAALVEQAAA A+SLQEQA LA +VA F+L +S A Sbjct: 577 DAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRLRDSRA 624 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 515 bits (1327), Expect = e-147, Method: Compositional matrix adjust. Identities = 292/579 (50%), Positives = 394/579 (68%), Gaps = 5/579 (0%) Query: 4 AMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWGRSKRVVTGAMKQALKQSDVL 63 ++ ++ + F ++ D AI + + + I+EW ++ +T A + +D + Sbjct: 20 SLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVAARTAMTVAAADGVLNADPV 79 Query: 64 PIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPAGYDPTARPWYKQAVEAGKPVLTAPYV 121 ++ Q++G F +G DK A +PAGYDPTARPWYKQAV AGKPVLT PY Sbjct: 80 FVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTARPWYKQAVAAGKPVLTKPYT 139 Query: 122 DATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVIIT 181 D T K +V+F PV V+ + + LD V V I PTP+SFAF+V +DG+++ Sbjct: 140 DVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPTPASFAFLVDRDGLMLA 199 Query: 182 HPNKELALKPVSSLDQTLSAQ---SLAGMKQGGSATIGGIRYLLFTQPIANTDWSLVVAL 238 HP+ + KP + L+ + +LA + + G L+ PI T+W+L++A+ Sbjct: 200 HPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAAKLVKGVPIKGTEWTLMLAM 259 Query: 239 DYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLT 298 D + T + + + VL + +A ++S T + +RL VR AM+ ++SG+GDLT Sbjct: 260 DKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQRLSRVRRAMDNLSSGNGDLT 319 Query: 299 RRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQ 358 RL G DE+ QISR+FN F ++I+ L D+RR+S++VK+SS+EIA+GN DLSARTEQQ Sbjct: 320 LRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQ 379 Query: 359 AGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESS 418 AG+LEETASAMEELTSTV+QN++NAR+AN+LA +AS +A GG+VVG VV+TM +IN SS Sbjct: 380 AGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQGGEVVGNVVSTMEAINASS 439 Query: 419 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIK 478 R+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK Sbjct: 440 RQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIK 499 Query: 479 GLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVN 538 LID SV KV G LV QAG TME++V+S+R V+ IV EI+ AS EQ+ GI EV A+ Sbjct: 500 VLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEIAHASAEQNGGIQEVNLAIT 559 Query: 539 QMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 577 +DE TQQNAALVEQAAAAA+SLQ++A L+ +V GFK+ Sbjct: 560 HIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust. Identities = 261/580 (45%), Positives = 364/580 (62%), Gaps = 7/580 (1%) Query: 4 AMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWGRSKRVVTGAMKQALKQSDVL 63 +++I +AAN R A + HAA I +W K + +++ SD Sbjct: 20 SVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLAGKSKMIASLEDISLTSDPD 79 Query: 64 PIVAAAQEAGSFDDAYIGYPDKR--MLALHPMPAGYDPTARPWYKQAVEAGKPVLTAPYV 121 ++ Q AG F D +GYPDKR +PA YDPT RPWYK ++AGKPV PYV Sbjct: 80 AMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTRPWYKGVLQAGKPV-ALPYV 138 Query: 122 DATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVIIT 181 +T+G L+V A PV L+AV+ DV LD+VV + I PTPSSF +V + G II Sbjct: 139 -STSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHPTPSSFGMLVEQGGRIIA 197 Query: 182 HPNKELALKPVSSLDQTLSAQSLAGMKQGG---SATIGGIRYLLFTQPIANTDWSLVVAL 238 HP+ +L K S L S ++A G + G L+ Q + TDW++VVA+ Sbjct: 198 HPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKLVRVQAVPGTDWNIVVAI 257 Query: 239 DYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLT 298 D +EA+ + AL+ S + V ++A++++ + RRLG + AM I SG GDLT Sbjct: 258 DQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLGQISAAMTAIGSGSGDLT 317 Query: 299 RRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQ 358 +RL G+DE+A I+++FN F K+ + DIR A E+V+V+S EIA+ N DLS RTE Sbjct: 318 QRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVASDEIAAANHDLSVRTESA 377 Query: 359 AGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESS 418 A SLE+TA++M E+++TV ++A A +A+Q + +A+ +A GG+VV VATM I + S Sbjct: 378 AASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGGKVVSDAVATMGEIEKVS 437 Query: 419 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIK 478 +I DIISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAVVA EVR+LAQRSA AA+E+K Sbjct: 438 AQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAHEVRNLAQRSAGAAREVK 497 Query: 479 GLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVN 538 L++ ++ +V GSQ V QAG TM ++V+ V + +I+ + EQ+ GI EV AV Sbjct: 498 DLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADIARTTTEQTRGIQEVNQAVI 557 Query: 539 QMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLD 578 Q+D QQNAALVE++AAA+ +LQ+QA LAA +A F++D Sbjct: 558 QLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID 597 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust. Identities = 224/342 (65%), Positives = 267/342 (78%), Gaps = 3/342 (0%) Query: 248 GALMTLSTVLAVLAIVASAILLSYTITR-LLRRLGVVRNAMEEIASGDGDLTRRLDTSGK 306 GA+ T+ +A V +AI+L Y + R +++ L E +A+GD LT R++ + Sbjct: 188 GAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD--LTTRIEPHSR 245 Query: 307 DELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETA 366 DE Q+ +A D + + +RR +ES+ +S EIASGN+DLSARTEQQAGSLEETA Sbjct: 246 DETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETA 305 Query: 367 SAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIIS 426 SAMEE+TSTV+QNADNARQANQ+AVSAS++A+ GGQ+VG+VV TM IN+SSRKIVDII Sbjct: 306 SAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIG 365 Query: 427 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQ 486 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DSV Sbjct: 366 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVG 425 Query: 487 KVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQ 546 KVE GS LVAQAG+TME+VVSSVR VTDIV EISAAS EQSSGI E+ AV QMDE TQQ Sbjct: 426 KVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQ 485 Query: 547 NAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESGAAHPMSP 588 NAALVEQAAAAAKS+QEQA L ++ FKL++ A+ P +P Sbjct: 486 NAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAP 527 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,462,644 Number of extensions: 51978 Number of successful extensions: 540 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 75 Length of query: 662 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 571 Effective length of database: 1,188,985 Effective search space: 678910435 Effective search space used: 678910435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)