BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0103.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312455|ref|YP_003776547.1| aromatic-amino-acid aminotransf...   833   0.0  
gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic ami...   398   e-112

>gi|300312455|ref|YP_003776547.1| aromatic-amino-acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/405 (100%), Positives = 405/405 (100%)

Query: 26  MNAPVSASLFSAIEMAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKA 85
           MNAPVSASLFSAIEMAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKA
Sbjct: 1   MNAPVSASLFSAIEMAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKA 60

Query: 86  EAELAAKLAPRTYLPIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGAD 145
           EAELAAKLAPRTYLPIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGAD
Sbjct: 61  EAELAAKLAPRTYLPIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGAD 120

Query: 146 FLKHFSPAGTEVWISDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKS 205
           FLKHFSPAGTEVWISDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKS
Sbjct: 121 FLKHFSPAGTEVWISDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKS 180

Query: 206 GSVVLLHACCHNPTGADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRF 265
           GSVVLLHACCHNPTGADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRF
Sbjct: 181 GSVVLLHACCHNPTGADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRF 240

Query: 266 AEAGGPLFVSNSFSKSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGG 325
           AEAGGPLFVSNSFSKSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGG
Sbjct: 241 AEAGGPLFVSNSFSKSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGG 300

Query: 326 QVVATALASPELRKLWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYS 385
           QVVATALASPELRKLWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYS
Sbjct: 301 QVVATALASPELRKLWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYS 360

Query: 386 GLTKAQVDRLRNEFSIYAVDTGRICVAALNTKNIDVVVDAIAKVL 430
           GLTKAQVDRLRNEFSIYAVDTGRICVAALNTKNIDVVVDAIAKVL
Sbjct: 361 GLTKAQVDRLRNEFSIYAVDTGRICVAALNTKNIDVVVDAIAKVL 405


>gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  398 bits (1022), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/397 (50%), Positives = 259/397 (65%), Gaps = 3/397 (0%)

Query: 34  LFSAIEMAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKAEAELAAKL 93
           +FS +     DPIL + E +  D+   K NL +G+Y D  G VP+L  V+ A A +A   
Sbjct: 1   MFSHLPPYAGDPILSLMEQFQRDERSNKVNLSIGIYTDGKGVVPVLPSVRTAAAAVAQAD 60

Query: 94  APRTYLPIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGADFLKHFSPA 153
           AP  YLP++G   Y +AV +L+FGA      E  AI VQ LGG+GALK+GAD +  F P 
Sbjct: 61  APYVYLPMEGHGAYRQAVAKLLFGA-DLPAPEHLAI-VQTLGGSGALKVGADLIARFFPQ 118

Query: 154 GTEVWISDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKSGSVVLLHA 213
            T +W+ DP+W+NH  +FE AGFK   YPYYD  T+G+NF GML  + ++  G+VVLLH 
Sbjct: 119 PT-IWLPDPTWDNHIGIFEGAGFKTERYPYYDAQTKGLNFEGMLAKIDSLPRGAVVLLHP 177

Query: 214 CCHNPTGADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRFAEAGGPLF 273
           CCHNPTG D T  QW Q++EVV  RGL+PF D+AYQGF + + ED   VR       P F
Sbjct: 178 CCHNPTGVDPTRAQWEQIVEVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFF 237

Query: 274 VSNSFSKSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGGQVVATALA 333
           +SNSFSK FSLY ER+GALS+    A +AA VL QLK  VR NYS+PP +G  +VA  L 
Sbjct: 238 LSNSFSKIFSLYSERIGALSVFCPQAGQAANVLGQLKLTVRRNYSSPPRNGALLVAHVLG 297

Query: 334 SPELRKLWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYSGLTKAQVD 393
             +L   W  E+ EMRVR+R+MR  L ++LK   P  DF F+++Q GMF Y+GL+ AQVD
Sbjct: 298 DDKLAAQWRGEVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVD 357

Query: 394 RLRNEFSIYAVDTGRICVAALNTKNIDVVVDAIAKVL 430
           RLR EF +YAV TGRICVA LN  N+  V + +A+VL
Sbjct: 358 RLREEFGVYAVGTGRICVAGLNDSNVARVAETMAEVL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,709
Number of extensions: 48056
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)