BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0100.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312453|ref|YP_003776545.1| ATPase [Herbaspirillum seropedi...   737   0.0  

>gi|300312453|ref|YP_003776545.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 363

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/363 (99%), Positives = 362/363 (99%)

Query: 1   MADLQPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQQSA 60
           MADLQPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGL YKEEGQQSA
Sbjct: 1   MADLQPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLRYKEEGQQSA 60

Query: 61  IELGHQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVA 120
           IELGHQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVA
Sbjct: 61  IELGHQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVA 120

Query: 121 GGYKALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGK 180
           GGYKALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGK
Sbjct: 121 GGYKALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGK 180

Query: 181 RASPQPSPIDFEHRLAIALIKLQAQGHHWFALEDESRLIGACALPLALHQRMQSLPMVWL 240
           RASPQPSPIDFEHRLAIALIKLQAQGHHWFALEDESRLIGACALPLALHQRMQSLPMVWL
Sbjct: 181 RASPQPSPIDFEHRLAIALIKLQAQGHHWFALEDESRLIGACALPLALHQRMQSLPMVWL 240

Query: 241 EDSREGRVERILRDYVSGLCDEYVTLDPRYGFERYRAHLLAALGKLVKRLGDQRYRQLVQ 300
           EDSREGRVERILRDYVSGLCDEYVTLDPR+GFERYRAHLLAALGKLVKRLGDQRYRQLVQ
Sbjct: 241 EDSREGRVERILRDYVSGLCDEYVTLDPRHGFERYRAHLLAALGKLVKRLGDQRYRQLVQ 300

Query: 301 LMETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLRQ 360
           LMETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLRQ
Sbjct: 301 LMETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLRQ 360

Query: 361 YRP 363
           YRP
Sbjct: 361 YRP 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,243,097
Number of extensions: 55225
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)