BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0095.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase [Herb...   726   0.0  

>gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/365 (99%), Positives = 362/365 (99%)

Query: 1   MSSSLSPSSRLATLIATSALSLATSHTGAATIAYVSHADSQDIYVLRLNNDGSVNLIDKV 60
           MSSSL PSSRLATLIATSALSLATSH GAATIAYVSHADSQDIYVLRLNNDGSVNLIDKV
Sbjct: 1   MSSSLPPSSRLATLIATSALSLATSHAGAATIAYVSHADSQDIYVLRLNNDGSVNLIDKV 60

Query: 61  DTGSTVMPLAISPDRKYLYASLRREPYAVASYAIDPASGKLKALSKAPLADNMANIATDR 120
           DTGSTVMPLAISPDRKYLYASLRREPYAVASYAIDPASGKLKALSKAPLADNMANIATDR
Sbjct: 61  DTGSTVMPLAISPDRKYLYASLRREPYAVASYAIDPASGKLKALSKAPLADNMANIATDR 120

Query: 121 SGRYLLAASYFGNKISVNAIGSDGAVQTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSD 180
           SGRYLLAASYFGNKISVNAIGSDGAVQTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSD
Sbjct: 121 SGRYLLAASYFGNKISVNAIGSDGAVQTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSD 180

Query: 181 VILQYRFDPASGAVTPNTPPSVASKAGAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQ 240
           VILQYRFDPASGAVTPNTPPSVASKAGAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQ
Sbjct: 181 VILQYRFDPASGAVTPNTPPSVASKAGAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQ 240

Query: 241 AGTLTLLGSDSALPEGFQSSEQLAAADLHLTPDGRFLYATERTSNTLTGYRVDRASGKLT 300
           AGTLTLLGSDSALPEGFQSSEQLAAADLHLTPDGRFLYATERTSNTLTGYRVDRASGKLT
Sbjct: 241 AGTLTLLGSDSALPEGFQSSEQLAAADLHLTPDGRFLYATERTSNTLTGYRVDRASGKLT 300

Query: 301 RILNIPTETQPRAFNIDPQGRYLLAVGQKAGLTSYAIDAASGMLTPLFRYTLGRNPNWVE 360
           RILNIPTETQPRAFNIDPQGRYLLAVGQKAGLTSYAIDAASG LTPLFRYTLGRNPNWVE
Sbjct: 301 RILNIPTETQPRAFNIDPQGRYLLAVGQKAGLTSYAIDAASGTLTPLFRYTLGRNPNWVE 360

Query: 361 IIDLP 365
           IIDLP
Sbjct: 361 IIDLP 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,090,053
Number of extensions: 47117
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)