BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0094.p (596 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 1197 0.0 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 384 e-107 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 382 e-107 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 381 e-107 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 376 e-105 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 1197 bits (3096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/596 (99%), Positives = 594/596 (99%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT Sbjct: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 Query: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL Sbjct: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 Query: 121 LDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 L+SAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 Query: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE Sbjct: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Query: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL Sbjct: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 Query: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV Sbjct: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 Query: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE Sbjct: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 Query: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPTGKPASKPRAAPAARPVT 540 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAP GKPASKPRAAPAARPVT Sbjct: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPAGKPASKPRAAPAARPVT 540 Query: 541 TPQVAAPAAPAVTAAAPSSSASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 TPQVAAPAAPAVTAAAPSS ASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF Sbjct: 541 TPQVAAPAAPAVTAAAPSSPASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust. Identities = 249/562 (44%), Positives = 339/562 (60%), Gaps = 51/562 (9%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++NL+++ L A+ + + ++V G+ + A + + ER L D T Sbjct: 3 IKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQ--ER--LPKTVAADNT 58 Query: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTY-------ERSLKYLDEYAKLPDLEGQD 113 GR +L DQA + + AE Y + +L++ +Y LP E Sbjct: 59 LIWI--GRQRTSL----DQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGR 112 Query: 114 PATKTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAM 173 K ++ D + L + +++KAGD I+ + T A Q Sbjct: 113 VLVK-KVSDGIDKTEQELTRFAEVIKAGD--------RQAIADQARKVGTIYTAMQLDGQ 163 Query: 174 ELNDNVTTQR-------------QREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPL 220 L+ T Q R +++V +V GL+ A + + LR + P+ Sbjct: 164 ALSKYETEQAAQSAGASMARYEASRNFSIVA--IVAGLLLAFY----SWWSLRRAIGEPM 217 Query: 221 NRAVHLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAK 280 RA+ D +A+GDLT V V S NE+G+L ++ MQ++L TV VRS SD+I T+ + Sbjct: 218 QRALRHFDAIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATR 277 Query: 281 EIAAGNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGE 340 EIA+GN+DLSSRTEQQA+SLEETA+SMEELT TVK NA+NA QA LA +AS+ A+ G Sbjct: 278 EIASGNLDLSSRTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNA 337 Query: 341 VVSQVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 400 VV +VV TM+ I SS KI DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 338 VVGRVVQTMEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 397 Query: 401 VRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEA 460 VR+LAQRS++AAKEIK LI SV++V+AGS+LV QAG TMS+V+ +VQRVTDI+ EI+ A Sbjct: 398 VRALAQRSSSAAKEIKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAA 457 Query: 461 SREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQV 520 S EQS GI+QV+ A+TQMDE TQQNAALVE+A+AAA+SL+ QA L+ V+IF++ Sbjct: 458 SNEQSAGIDQVSHAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNG--- 514 Query: 521 APTGKPASKPRAAPAARPVTTP 542 P KP AA A+R P Sbjct: 515 ---AGPTVKPPAAAASRATVKP 533 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 228/352 (64%), Positives = 276/352 (78%), Gaps = 9/352 (2%) Query: 166 DAYQKRAMELNDNVTTQRQREYNLVVWLVVTGLIGAMFLV-VGVHFLLRNIVLTPLNRAV 224 DA KR+ D++ Q R L W++ GL+ A+ ++ +G+ ++ V PLN AV Sbjct: 172 DAGSKRS----DDMAEQVYRSATL--WII--GLLAAIVVIALGLAVMVARAVSRPLNEAV 223 Query: 225 HLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAA 284 + + VA GDLT + S++E G L ++R+M +L V VR+ +D+I T+++EIA Sbjct: 224 AVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIAT 283 Query: 285 GNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQ 344 GN+DLSSRTE+QA SLEETA++MEELT TVKQNA+NA QANQLA SAS A++GG VV Q Sbjct: 284 GNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQ 343 Query: 345 VVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 404 VV TM+ I +SS +I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL Sbjct: 344 VVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 403 Query: 405 AQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQ 464 AQRSA+AAKEIK LIDDSVEKV AGSQLVE+AGATMSEVV SV+RVTD+V EI+ AS EQ Sbjct: 404 AQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQ 463 Query: 465 STGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIE 516 STGIE++NRAITQMDEVTQQNAALVEEAAAAAQSLQ QA L VS+FK++ Sbjct: 464 STGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 381 bits (979), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/411 (60%), Positives = 292/411 (71%), Gaps = 27/411 (6%) Query: 191 VWLVVT--GLIG-AMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVEVASSNEI 247 +W++VT IG AM L V V L + PL AV + VA GDLTT++E A +E Sbjct: 191 LWIIVTVAACIGLAMLLAVWVSRL----IARPLEEAVSVAQRVAGGDLTTRIEPAGKDET 246 Query: 248 GRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASM 307 G+L A++SM +L+ V +VR + +I T++ EIA+GN+DLSSRTE+QASSLEETA++M Sbjct: 247 GQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAM 306 Query: 308 EELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVID 367 EELT TVKQNA+NA QANQLA SAS AS+GG VV+QVVDTM +IN SSRKI DII VID Sbjct: 307 EELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVID 366 Query: 368 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVE 427 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ SV +V+ Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVD 426 Query: 428 AGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAA 487 GS+LVE+AG TMSEVV SV+RVTDIVGEI+ AS+EQS GIEQVN AI QMDEVTQQNAA Sbjct: 427 MGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAA 486 Query: 488 LVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPTGKPASKP--RAAPAARPVTTPQVA 545 LVEEAAAAAQSLQ QA L V FK+E +PAS+P RAA AR Sbjct: 487 LVEEAAAAAQSLQEQAETLTQTVGFFKLEQQ----PDEPASRPPVRAASVARTAAVRH-- 540 Query: 546 APAAPAVTAAAPSSSASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 APA A S++ + P S +LP A +D WE+F Sbjct: 541 APATRPAATLAASAAPAKPASGSRLPGG------------AAEDGGSWEQF 579 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/348 (65%), Positives = 273/348 (78%), Gaps = 14/348 (4%) Query: 209 HFLLRNIVLTPLNRAVHLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRV 268 H +LR I P +A + + +A GDLT +E A + L+ A+RSM+ +LL+T++ + Sbjct: 210 HGILRTIGGDPA-QAAEVANRIAQGDLTPNIETAPGDSSSLLY-AVRSMRDSLLSTITNI 267 Query: 269 RSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLA 328 ++S+ +I ++++EIA+GN+DLS RTEQQA S+EETA++MEELT TVKQNA+NA QANQLA Sbjct: 268 KASAGTIASASQEIASGNLDLSGRTEQQAGSIEETASAMEELTATVKQNADNARQANQLA 327 Query: 329 HSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAG 388 SAS A +GG VVSQVV TM+ I DSSRKI DII VIDGIAFQTNILALNAAVEAARAG Sbjct: 328 ESASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVIDGIAFQTNILALNAAVEAARAG 387 Query: 389 EQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQ 448 EQGRGFAVVASEVRSLAQRSA+AAKEIK+LIDDSV KV+ GS+LVEQAGATM+EVV SV+ Sbjct: 388 EQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDTGSKLVEQAGATMTEVVASVR 447 Query: 449 RVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVG 508 RVTDIVGEI+ AS+EQS GI +V RAITQMDE TQQNAALVE+AAAAAQSLQ QA L G Sbjct: 448 RVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAG 507 Query: 509 AVSIFKIEAHQ--VAPTGKPASKPRAAPAARPV--TTPQVAAPAAPAV 552 V F ++ Q +APT A+K PA RPV TTP PA PA+ Sbjct: 508 LVGRFHVDGSQASIAPTAPQAAK----PATRPVQPTTP----PATPAL 547 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.123 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,158,394 Number of extensions: 37174 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 71 Length of query: 596 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 505 Effective length of database: 1,188,985 Effective search space: 600437425 Effective search space used: 600437425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)