BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0092.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 509 e-146 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 139 3e-34 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 116 2e-27 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 111 7e-26 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 109 3e-25 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 509 bits (1312), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 254/255 (99%) Query: 1 MDVSDTPTPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 MDVSDTP PLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAAARRTDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 GLAAARRT+EQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAQQEAESGSASAA 255 RRAQQEAESGSASAA Sbjct: 241 RRAQQEAESGSASAA 255 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 18 QSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Q+LS V L I G+ G KLPTE+ + Q GVSRTVVREAI+RL+ G+VE R Sbjct: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Query: 78 GIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTDEQLQEIRE 137 G G FV E + ID +++ +L ++ELR ++E E A AA RR+ E LQ I Sbjct: 68 GSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 Query: 138 ALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELAHD 197 AL + GGD V D FH A+A AT N YFI+ + L + TA + Sbjct: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYL----EAATA-VTRG 182 Query: 198 QQASYLD---RVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQ 244 +A Y D +V+ EHE I EAI GD AAR A + H+ N+ RL + Q Sbjct: 183 NEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 15/232 (6%) Query: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 +P+ ++ V L I G +T G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 Query: 76 RHGIGTFVLEAKKGGNINIDPATITTMR--DLLALLELRISLETETAGLAAARRTDEQLQ 133 G GT+V E K G P R ++ LELR+ +E E A +AA RR + L Sbjct: 88 LRGSGTYVKE--KPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLD 145 Query: 134 EIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV-----IPRKR 188 + L+ F A + GG DF FH AIA ATGN F++++ L V + R Sbjct: 146 RMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHL 205 Query: 189 INTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 ++ A Q A +D EH I+E I DAE AR AMR H+ N+R R+ Sbjct: 206 MHIAPWKRSQDA--MD----EHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 111 bits (277), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 15 RKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVE 74 R +L+ V + L I G P +LP+E E+ + VSRTV+REAISRL++ GLV Sbjct: 25 RGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVG 84 Query: 75 TRHGIGTFVLEAKKGGNINIDPATITTMRD----LLALLELRISLETETAGLAAARRTDE 130 +R G GT VL A +D + RD +L ++ELR +E E A LAA RRT Sbjct: 85 SRRGSGTVVLPANPATPFRLD-LDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSA 143 Query: 131 QLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRIN 190 Q I++AL G D V DF FH AI+NA+ N + ++ L + I Sbjct: 144 QNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFL--HAAIR 201 Query: 191 TAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRA 243 A + + ++ +V+ EH + EAI+ GDAEAARAA H+ NS +RL+ A Sbjct: 202 VARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAA 254 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 115/235 (48%), Gaps = 5/235 (2%) Query: 7 PTPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISR 66 P L R S S+ + + A I G L KLPTE E+ Q SRT VREA+SR Sbjct: 6 PPSLAASRTHRLSRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 Query: 67 LQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAAR 126 L++ G+V +R G G +V + I ++ D+ R +E AG+AA Sbjct: 66 LRSEGIVVSRRGSGNYVQRLPTLSSQG--SPQIASIHDVERYYAFRECVEVGAAGIAATA 123 Query: 127 RTDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPR 186 R DE +Q +R AL + Q G V D H AIA AT N +FI I H +G I R Sbjct: 124 RQDEDVQAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEH-ALGPI-R 181 Query: 187 KRINTAE-LAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 + + A+ L Q + + EH+ I +AIA G A AAMR H+ ++R R+ Sbjct: 182 QCMELAQNLGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRI 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 588,005 Number of extensions: 21995 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 15 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)