BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0086.p (621 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312439|ref|YP_003776531.1| molecular chaperone protein [He... 1251 0.0 gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 fami... 776 0.0 gi|300309950|ref|YP_003774042.1| molecular chaperone protein [He... 450 e-127 gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like A... 56 9e-09 >gi|300312439|ref|YP_003776531.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 621 Score = 1251 bits (3236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/621 (100%), Positives = 621/621 (100%) Query: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60 Query: 61 PNGHANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120 PNGHANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA Sbjct: 61 PNGHANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120 Query: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR Sbjct: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180 Query: 181 LLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDDF 240 LLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDDF Sbjct: 181 LLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDDF 240 Query: 241 DHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAVLRSGEEVHLSITA 300 DHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAVLRSGEEVHLSITA Sbjct: 241 DHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAVLRSGEEVHLSITA 300 Query: 301 AQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNPL 360 AQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNPL Sbjct: 301 AQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNPL 360 Query: 361 SNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIP 420 SNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIP Sbjct: 361 SNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIP 420 Query: 421 CARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVD 480 CARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVD Sbjct: 421 CARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVD 480 Query: 481 ADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQVEA 540 ADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQVEA Sbjct: 481 ADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQVEA 540 Query: 541 ERIVLATRSALQADAALLSEAERQAIEAQVEAVSAAAQGTDHLAIKAAVDALAHGTEEFA 600 ERIVLATRSALQADAALLSEAERQAIEAQVEAVSAAAQGTDHLAIKAAVDALAHGTEEFA Sbjct: 541 ERIVLATRSALQADAALLSEAERQAIEAQVEAVSAAAQGTDHLAIKAAVDALAHGTEEFA 600 Query: 601 ARRMDRSVHAALAGKKLDEVA 621 ARRMDRSVHAALAGKKLDEVA Sbjct: 601 ARRMDRSVHAALAGKKLDEVA 621 >gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 family [Herbaspirillum seropedicae SmR1] Length = 642 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/640 (63%), Positives = 493/640 (77%), Gaps = 22/640 (3%) Query: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60 M+LLQI+EPG STAPHQ RLAVGIDLGTTNSLVATV++ +L D+ G+ LLPSVVRYL Sbjct: 1 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60 Query: 61 PNGH---------ANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIA--HAENMPYDFQD 109 P H A +G+ A+AAQ+ DPRNT+ S+KR MGR DI+ ++ +MPY F D Sbjct: 61 P-AHSLQPADRPPAVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFID 119 Query: 110 QPGMVQIKTVAGVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKD 169 +PG+VQI T AG+K+P++VSA IL LRQ AE +LG +L GAVITVPAYFDDAQRQATKD Sbjct: 120 KPGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKD 179 Query: 170 AAQLAGLNVLRLLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLAT 229 AA+LAGLNVLRLLNEPTAAAIAYGLD ++EGVFA+YDLGGGTFDISILKL+RGVFEVLAT Sbjct: 180 AARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLAT 239 Query: 230 GGDSALGGDDFDHRLFCWISHEAQLQP--LSDEDTRLLMVKAREVKELLSTKDEVQIDAV 287 GD ALGGDDFD + WI ++ L L+ +DTR L+ AR+ KE LS + I+ Sbjct: 240 NGDGALGGDDFDRCIHDWIVDQSPLASAELTTQDTRRLLTAARQAKETLSRETSATIELN 299 Query: 288 LRSGEEVHLSITAAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHI 347 L SG+ V L++T F I+Q L+A+T+ P RKALRDAGL V ++DGVVLVGG+TRMP + Sbjct: 300 LSSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQV 359 Query: 348 RRAVGEFFKTNPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGG 407 R AV +FF PL+++DPD+VVALGAA+QAN+LAGNR D WLLLDV PLSLG+ETMGG Sbjct: 360 RAAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSD-WLLLDVCPLSLGLETMGG 418 Query: 408 LAEKVIPRNSTIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMA 467 L EK+IPRNSTIP ARAQEFTTFKDGQTAM++HV+QGERELVADCRSLAR ELRGIPPM Sbjct: 419 LVEKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMV 478 Query: 468 AGAARIRVTYQVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADED 527 AGAARIRVT+Q+DADGLL+VSARE ++GVEA++TVKPSYGL D IARML E+ A +D Sbjct: 479 AGAARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAVGHATDD 538 Query: 528 MQRRALREEQVEAERIVLATRSALQADA-ALLSEAE----RQAIEAQVEAVSAAAQGTDH 582 M+ R LRE QV A ++ AT +AL+ D +LLS E RQ + A E + A + D Sbjct: 539 MKMRMLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALTELIETAREANDD 598 Query: 583 --LAIKAAVDALAHGTEEFAARRMDRSVHAALAGKKLDEV 620 A+ A DAL T+EFAARRM+ SV AL+G++LD + Sbjct: 599 NIAALGRACDALNQATQEFAARRMNASVSLALSGQRLDAI 638 >gi|300309950|ref|YP_003774042.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust. Identities = 254/605 (41%), Positives = 382/605 (63%), Gaps = 31/605 (5%) Query: 22 VGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYLPNGHANIGYKAQAAQTTDPRN 81 +GIDLGTTNS VA + + P+V+ + +G PS++ Y +G +G A+ T+P+N Sbjct: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVTNPKN 64 Query: 82 TIVSVKRFMGRGL--KDIAHAEN-MPY-----DFQDQPGMVQIKTVAGVKSPVEVSAQIL 133 TI + KR +GR K++ N MPY D D V+ K +A P ++SA++L Sbjct: 65 TIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLA----PPQISAEVL 120 Query: 134 ATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYG 193 +++TAED LG+++ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+A+G Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 Query: 194 LDNSSEG--VFAVYDLGGGTFDISILKLT----RGVFEVLATGGDSALGGDDFDHRLFCW 247 LD + +G AVYDLGGGTFD+SI+++ FEVL+T GD+ LGG+DFD RL + Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 Query: 248 ISHEAQL---QPLSDEDTRLLMVKA--REVKELLSTKDEVQIDA---VLRSGEEVHLS-- 297 I E + LS + L +KA K LS+ + +I+ + +G VHL+ Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 Query: 298 ITAAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKT 357 IT A+ + + L+AKT+ P R A++DAG+ V D+D V+LVGG TRMP + V EFF Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 Query: 358 NPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNS 417 +P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIETMGG+ K+I +N+ Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRK---DVLLLDVTPLSLGIETMGGVMTKMIKKNT 417 Query: 418 TIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTY 477 TIP +Q F+T D Q A+ I V QGERE+ ++L F L GIPP G +I VT+ Sbjct: 418 TIPTKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTF 477 Query: 478 QVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQ 537 +DA+G+L V A++ +G E IT+K + GL ++EI +M++++ ++A+ED + + L E + Sbjct: 478 DIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETR 537 Query: 538 VEAERIVLATRSALQADAALLSEAERQAIEAQVEAVSAAAQGTDHLAIKAAVDALAHGTE 597 + + +V +T+ AL L E+ IEA ++ + A +G D AI A +AL+ + Sbjct: 538 NQGDALVHSTKKALGEYGDKLEAGEKDVIEAAIKNLEEALKGDDKAAIDAKTEALSTAAQ 597 Query: 598 EFAAR 602 + + Sbjct: 598 KLGEK 602 >gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like ATPase [Herbaspirillum seropedicae SmR1] Length = 347 Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 152 VITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYGLDNSSEGVFAVYDLGGGT 211 +I VP +R+A +++A AG + + L+ EP AAAI GL S V D+GGGT Sbjct: 112 IICVPCGSTQVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGT 171 Query: 212 FDISILKLTRGVFEVLATGGDSALGGDDFDHRLFCWI 248 ++ I+ L V++ G +GGD FD + +I Sbjct: 172 TEVGIISLGGMVYK-----GSVRVGGDKFDEAIVNYI 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,791,296 Number of extensions: 74045 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 4 Length of query: 621 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 530 Effective length of database: 1,188,985 Effective search space: 630162050 Effective search space used: 630162050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)